WebQTL
 
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Introduction modify this page

GenomeGraph is designed to help discover genetic sources of variation in trait and transcript expression at a global level. Choose a database and click on the Mapping button. The y-axis marks the physical locations of genes from which transcripts are synthesized. In contrast, the x-axis plots the locations of the highest LRS values associated with each trait or transcript; in essence, the location of the best QTL. The false discovery rate (FDR) can be tuned from 1 (all data shown) to values between 0.1 and 0.01 (only transcripts with significant QTLs shown).

Note that many data set results are still being computed. You may encounter an "in progress" message.

For a more complete explanation see Chesler, Lu and colleagues (2005), or the GenomeGraph Help page.

Choose Data Set

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CITG Web services initiated January, 1994 as Portable Dictionary of the Mouse Genome; June 15, 2001 as WebQTL; and Jan 5, 2005 as GeneNetwork.This site is currently operated by Rob Williams, Pjotr Prins, Zachary Sloan, Arthur Centeno. Design and code by Pjotr Prins, Zach Sloan, Arthur Centeno, Danny Arends, Christian Fischer, Sam Ockman, Lei Yan, Xiaodong Zhou, Christian Fernandez, Ning Liu, Rudi Alberts, Elissa Chesler, Sujoy Roy, Evan G. Williams, Alexander G. Williams, Kenneth Manly, Jintao Wang, and Robert W. Williams, colleagues. Python Powered Registered with Nif
GeneNetwork support from:
  • The UT Center for Integrative and Translational Genomics
  • NIGMS Systems Genetics and Precision Medicine project (R01 GM123489, 2017-2021)
  • NIDA NIDA Core Center of Excellence in Transcriptomics, Systems Genetics,and the Addictome (P30 DA044223, 2017-2022)
  • NIA Translational Systems Genetics of Mitochondria, Metabolism, and Aging (R01AG043930, 2013-2018)
  • NIAAA Integrative Neuroscience Initiative on Alcoholism (U01 AA016662, U01 AA013499, U24 AA013513, U01 AA014425, 2006-2017)
  • NIDA, NIMH, and NIAAA (P20-DA 21131, 2001-2012)
  • NCI MMHCC (U01CA105417), NCRR, BIRN, (U24 RR021760)