Data Set Group2: UT Hippocampus Affy RaEx 1.0 Exon (Jul09)

Data Set: UT Hippocampus Affy RaEx 1.0 Exon (Jul09) RMA GN Accession: GN231 GEO Series: No Geo series yet Title: Organism: Rat (Rattus norvegicus, mRatBN7.2/rn7) Group: HXBBXH Tissue: Hippocampus mRNA Dataset Status: Public Platforms: Affy Rat Exon 1.0ST (GPL6194) Normalization: RMA

Contact Information Robert Williams University of Tennessee Health Science Center 71 S Manassas St, Room 405 TSRB Memphis, TN 38163 USA Tel. 901 448-7050 rwilliams@uthsc.edu Website Download datasets and supplementary data files GN231_Individual_samples_rev081815.txt.zip (N/A) GN231_MeanDataAnnotated_rev081815.txt (N/A) GN231_StdError_rev081815.txt (N/A)

Specifics of this Data Set:

None

Summary:

The HXB/BXH data provides estimates of Hippocampus mRNA expression. Affymetrix Rat Exon 1.0ST microarrays were used for hybridization using standard procedures. Total of 68 samples come from 30 BXH/HXB strain (one male and one female) and 2 parental strains (two males and two females).

About the cases used to generate this set of data:

Index run order case ID strain RNA ID Tube ID tissue out ID BORN SEX age from Extracted RIN 260:280 260:230 ng/ul 8ug 1 1 100908.03 BN.Lx R5448H R5448H1 hippo BN.Lx 12/25/10 female 1 6 weeks Pravence's lab 3/14/13   2.03 2.2 1042.14 8 2 16 100908.02 BN.Lx R5446H R5446H1 hippo BN.Lx 12/25/10 male 2 6 weeks Pravence's lab 3/14/13   2.02 2.24 392.64 20 3 57 100908.04 BN.Lx R5450H R5450H1 hippo BN.Lx 12/25/10 female 2 6 weeks Pravence's lab 3/14/13   2.06 2.18 1233.45 6 4 68 100908.01 BN.Lx R5444H R5444H1 hippo BN.Lx 12/25/10 male 1 6 weeks Pravence's lab 3/14/13   2.05 2.05 640.56 12 5 3 101308.03 BXH10 R5390H R5390H1 hippo RI 10C 6/8/11 female 1 6 weeks Pravence's lab 3/4/13   1.97 2.26 444.35 18 6 66 101308.01 BXH10 R5386H R5386H1 hippo RI 10C 2/6/11 male 1 6 weeks Pravence's lab 3/4/13   2.04 2.25 746.6 11 7 5 110608.19 BXH11 R5380H R5380H1 hippo RI 11C 5/25/11 female 1 6 weeks Pravence's lab 3/4/13   1.97 2.35 269.58 30 8 64 110608.17 BXH11 R5378H R5378H1 hippo RI 11C 5/25/11 male 1 6 weeks Pravence's lab 3/4/13   2.04 2.28 811.02 10 9 7 110608.23 BXH12 R5384H R5384H1 hippo RI 12C 3/26/11 female 1 6 weeks Pravence's lab 3/4/13   2.06 2.28 923.13 9 10 62 110608.21 BXH12 R5382H R5382H1 hippo RI 12C 3/26/11 male 1 6 weeks Pravence's lab 3/4/13   1.96 2.33 260.39 31 11 9 101508.19 BXH13 R5438H R5438H1 hippo RI 13C 4/20/11 female 1 6 weeks Pravence's lab 3/10/13   1.98 2.33 274.04 29 12 60 101508.17 BXH13 R5436H R5436H1 hippo RI 13C 4/20/11 male 1 6 weeks Pravence's lab 3/10/13   1.98 2.26 334.92 24 13 11 110608.27 BXH2 R5462H R5462H1 hippo RI 2C 4/1/11 female 1 6 weeks Pravence's lab 3/14/13   2.06 2.3 1050.29 8 14 58 110608.25 BXH2 R5464H R5464H1 hippo RI 2C 4/1/11 male 1 6 weeks Pravence's lab 3/14/13   2.04 2.29 804.77 10 15 56 100908.05 BXH3 R5452H R5452H1 hippo RI 3C 1/14/11 male 1 6 weeks Pravence's lab 3/5/13   1.97 2.36 306.01 26 16 59 100908.08 BXH3 R5394H R5394H1 hippo RI 3C 1/14/11 female 2 6 weeks Pravence's lab 3/5/13   1.97 2.28 409.78 20 17 13 110608.31 BXH5 R5368H R5368H1 hippo RI 5C 4/1/11 female 1 6 weeks Pravence's lab 3/3/13   2.07 2.3 1235.02 6 18 54 110608.29 BXH5 R5366H R5366H1 hippo RI 5C 4/1/11 male 1 6 weeks Pravence's lab 3/3/13   2.04 2.28 905 9 19 15 110608.11 BXH6 R5372H R5372H1 hippo RI 6C 6/4/11 female 1 6 weeks Pravence's lab 3/3/13   2.05 1.95 692.63 12 20 52 110608.09 BXH6 R5370H R5370H1 hippo RI 6C 6/4/11 male 1 6 weeks Pravence's lab 3/3/13 8.1 2.06 2.08 954.85 8 21 17 112008.07 BXH8 R5360H R5360H1 hippo RI 8C 4/17/11 female 1 6 weeks Pravence's lab 2/28/13 9.1 2.07 2.27 1127.86 7 22 50 112008.05 BXH8 R5358H R5358H1 hippo RI 8C 4/17/11 male 1 6 weeks Pravence's lab 2/28/13 9.1 2.08 2.2 682.5 12 23 19 110608.15 BXH9 R5376H R5376H1 hippo RI 9C 6/16/11 female 1 6 weeks Pravence's lab 3/3/13 9.5 2.08 2.24 736.93 11 24 48 110608.13 BXH9 R5374H R5374H1 hippo RI 9C 6/16/11 male 1 6 weeks Pravence's lab 3/3/13 8.9 1.98 2.25 434.51 18 25 21 110608.03 HXB1 R5422H R5422H1 hippo RI 1 3/13/11 female 1 6 weeks Pravence's lab 3/10/13   1.99 2.22 401.83 20 26 46 110608.01 HXB1 R5420H R5420H1 hippo RI 1 3/13/11 male 1 6 weeks Pravence's lab 3/10/13   1.97 2.29 351.01 23 27 23 112008.51 HXB10 R5470H R5470H1 hippo RI 10 3/30/11 female 1 6 weeks Pravence's lab 3/17/13   2.04 2.26 743.27 11 28 44 112008.49 HXB10 R5472H R5472H1 hippo RI 10 3/30/11 male 1 6 weeks Pravence's lab 3/17/13   2.05 2.21 958.07 8 29 25 112008.55 HXB13 R5352H R5352H1 hippo RI 13 3/3/11 female 1 6 weeks Pravence's lab 2/28/13   2.06 2.13 306.01 26 30 42 112008.53 HXB13 R5350H R5350H1 hippo RI 13 3/3/11 male 1 6 weeks Pravence's lab 2/28/13 9.1 2.09 2.24 965.01 8 31 27 112008.11 HXB15 R5414H R5414H1 hippo RI 15 1/22/11 female 1 6 weeks Pravence's lab 3/6/13 8.7 2.03 2.31 788.08 10 32 40 112008.09 HXB15 R5412H R5412H1 hippo RI 15 1/22/11 male 1 6 weeks Pravence's lab 3/6/13   2.05 2.3 1041.66 8 33 29 112008.47 HXB17 R5474H R5474H1 hippo RI 17 4/13/11 female 1 6 weeks Pravence's lab 3/17/13   2.03 2.28 758.42 11 34 38 112008.45 HXB17 R5476H R5476H1 hippo RI 17 4/13/11 male 1 6 weeks Pravence's lab 3/17/13   2.05 2.27 1112.55 7 35 14 112008.22 HXB18 R5409H R5409H1 hippo RI 18 2/2/11 male 1 6 weeks Pravence's lab 3/6/13   2.06 2.27 1281.26 6 36 31 112008.23 HXB18 R5410H R5410H1 hippo RI 18 2/2/11 female 1 6 weeks Pravence's lab 3/6/13 8.9 1.98 2.29 356.56 22 37 36 112008.13 HXB2 R5416H R5416H1 hippo RI 2 1/10/11 male 1 6 weeks Pravence's lab 3/6/13 8.2 2.06 2.3 1471.72 5 38 67 112008.15 HXB2 R5418H R5418H1 hippo RI 2 1/10/11 female1 6 weeks Pravence's lab 3/6/13   2.01 2.29 690.65 12 39 33 112008.19 HXB20 R5406H R5406H1 hippo RI 20 5/24/11 female 1 6 weeks Pravence's lab 3/6/13   2.07 2.24 1386.52 6 40 34 112008.17 HXB20 R5404H R5404H1 hippo RI 20 2/16/11 male 1 6 weeks Pravence's lab 3/6/13 8.6 2.05 2.26 1072.81 7 41 12 101508.02 HXB21 R5458H R5458H1 hippo RI 21 2/3/11 male 2 6 weeks Pravence's lab 3/14/13   2 2.23 791.4 10 42 35 101508.04 HXB21 R5460H R5460H1 hippo RI 21 2/3/11 female 1 6 weeks Pravence's lab 3/14/13   1.97 2.29 413.19 19 43 32 112008.33 HXB22 R5484H R5484H1 hippo RI 22 4/5/11 male 1 6 weeks Pravence's lab 3/18/13   2.08 2.16 755.61 11 44 37 112008.35 HXB22 R5482H R5482H1 hippo RI 22 4/5/11 female 1 6 weeks Pravence's lab 3/18/13   2.02 2.3 978.86 8 45 10 101508.06 HXB23 R5454H R5454H1 hippo RI 23 3/15/11 male 2 6 weeks Pravence's lab 3/14/13   2.05 2.3 1052.18 8 46 61 101508.08 HXB23 R5456H R5456H1 hippo RI 23 3/15/11 female 2 6 weeks Pravence's lab 3/14/13   2.06 2.27 1281.26 6 47 30 100908.09 HXB24 R5396H R5396H1 hippo RI 24 2/6/11 male 1 6 weeks Pravence's lab 3/5/13 8.4 2.08 1.74 764.68 10 48 39 100908.11 HXB24 R5400H R5400H1 hippo RI 24 2/15/11 female 1 6 weeks Pravence's lab 3/5/13 8.8 2.04 2.26 906.15 9 49 28 101508.09 HXB25 R5428H R5428H1 hippo RI 25 3/1/11 male 1 6 weeks Pravence's lab 3/10/13 8.5 2.05 2.3 966.92 8 50 41 101508.11 HXB25 R5430H R5430H1 hippo RI 25 3/1/11 female 1 6 weeks Pravence's lab 3/10/13   2.03 2.3 811.64 10 51 8 101508.22 HXB27 R5441H R5441H1 hippo RI 27 4/19/11 male 1 6 weeks Pravence's lab 3/10/13   2.02 2.24 428.61 19 52 43 101508.23 HXB27 R5442H R5442H1 hippo RI 27 4/19/11 female 1 6 weeks Pravence's lab 3/10/13   2.02 2.27 767.32 10 53 6 112008.26 HXB29 R5364H R5364H1 hippo RI 29 2/13/11 male 2 6 weeks Pravence's lab 3/3/13   2.06 2.29 961 8 54 63 112008.28 HXB29 R5362H R5362H1 hippo RI 29 2/13/11 female 2 6 weeks Pravence's lab 3/3/13 8.8 2.07 2.26 830.15 10 55 26 112008.37 HXB3 R5480H R5480H1 hippo RI 3 3/16/11 male 1 6 weeks Pravence's lab 3/18/13 8.7 2.05 2.26 1169.97 7 56 45 112008.39 HXB3 R5478H R5478H1 hippo RI 3 3/16/11 female 1 6 weeks Pravence's lab 3/18/13   2.01 2.18 864.52 9 57 4 112008.30 HXB31 R5347H R5347H1 hippo RI 31 3/27/11 male 2 6 weeks Pravence's lab 2/28/13   2.1 2.29 881.39 9 58 47 112008.31 HXB31 R5348H R5348H1 hippo RI 31 3/27/11 female 1 6 weeks Pravence's lab 2/28/13   1.96 2.37 194.23 41 59 24 101508.13 HXB4 R5432H R5432H1 hippo RI 4 2/25/11 male 1 6 weeks Pravence's lab 3/10/13 8.4 2.06 2.29 1345.87 6 60 49 101508.15 HXB4 R5434H R5434H1 hippo RI 4 2/25/11 female 1 6 weeks Pravence's lab 3/10/13   2.05 2.21 663.4 12 61 22 112008.41 HXB5 R5468H R5468H1 hippo RI 5 4/20/11 male 1 6 weeks Pravence's lab 3/17/13   2.05 2.26 961.62 8 62 51 112008.43 HXB5 R5466H R5466H1 hippo RI 5 4/20/11 female 1 6 weeks Pravence's lab 3/17/13   1.99 2.32 349.47 23 63 20 110608.05 HXB7 R5424H R5424H1 hippo RI 7 1/19/11 male 1 6 weeks Pravence's lab 3/10/13 8.5 2.04 2.29 911.71 9 64 53 110608.07 HXB7 R5426H R5426H1 hippo RI 7 3/28/11 female 1 6 weeks Pravence's lab 3/10/13   1.97 2.28 423.45 19 65 2 112008.02 SHR R5355H R5355H1 hippo SHR 12/25/10 male 2 6 weeks Pravence's lab 2/28/13   2.08 2.24 684.67 12 66 18 112008.01 SHR R5354H R5354H1 hippo SHR 12/25/10 male 1 6 weeks Pravence's lab 2/28/13   2.07 2.29 728.58 11 67 55 112008.03 SHR R5356H R5356H1 hippo SHR 12/25/10 female 1 6 weeks Pravence's lab 2/28/13   1.97 2.36 265.66 30 68 65 112008.04 SHR R5357H R5357H1 hippo SHR 12/25/10 female 2 6 weeks Pravence's lab 2/28/13   2.05 2.29 967.24 8

About the tissue used to generate this set of data:

About the array platform:

About data values and data processing:

Notes:

Experiment Type:

Contributor:

Citation:

Data source acknowledgment:

Data were generated with NIAAA grants U01AA13499 to Robert W. Williams and a grant to Gerd Kempermann, Genomics of Regeneration in the Central Nervous System, Center for Regenerative Therapies, Dresden.

Study Id:

76

• The UT Center for Integrative and Translational Genomics
• NIGMS Systems Genetics and Precision Medicine project (R01 GM123489, 2017-2021)
• NIDA NIDA Core Center of Excellence in Transcriptomics, Systems Genetics, and the Addictome (P30 DA044223, 2017-2022)
• NIA Translational Systems Genetics of Mitochondria, Metabolism, and Aging (R01AG043930, 2013-2018)
• NIAAA Integrative Neuroscience Initiative on Alcoholism (U01 AA016662, U01 AA013499, U24 AA013513, U01 AA014425, 2006-2017)
• NIDA, NIMH, and NIAAA (P20-DA 21131, 2001-2012)
• NCI MMHCC (U01CA105417), NCRR, BIRN, (U24 RR021760)