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Data Set Group: GenEx BXD EtOH Liver Affy M430 2.0 (Sep12) MAS5 modify this page

Data Set: GenEx BXD Sal Liver Affy M430 2.0 (Feb11) RMA Females ** modify this page
GN Accession: GN312
GEO Series: No Geo series yet
Title:
Organism: Mouse (mm10)
Group: BXD
Tissue: Liver mRNA
Dataset Status: Public
Platforms: Affy Mouse Genome 430 2.0 (GPL1261)
Normalization: RMA
Contact Information
Robert Rooney
Genome Explorations Inc.
654 Jefferson Avenue
Memphis, TN 38105 USA
Tel. 901 578-5708
rrooney@genome-explorations.com
Website
Download datasets and supplementary data files

Specifics of this Data Set:
None

Summary:

These data generated by Dr. Robert Rooney, Kristin Hamre, Divyen Patel, and colleagues at Genome Explorations as part of an SBIR from NIAAA (2010-2011).

Data entered by Arthur Centeno, Jan and Feb 2011.

Data error checked by Robert W. Williams, Jan-May 2011.

eQTLs with LOD > 10

 

  1. UNC Agilent G4121A Liver LOWESS Stanford (Jan06) Females: 303
  2. UNC Agilent G4121A Liver LOWESS Stanford (Jan06) Males: 279
  3. UNC Agilent G4121A Liver LOWESS Stanford (Jan06) Both Sexes: 493
  4. GenEx BXD Sal Liver Affy M430 2.0 (Feb11) RMA Females: 320
  5. GenEx BXD Sal Liver Affy M430 2.0 (Feb11) RMA Males: 207
  6. GenEx BXD Sal Liver Affy M430 2.0 (Feb11) RMA Both Sexes: 513
  7. GenEx BXD EtOH Liver Affy M430 2.0 (Feb11) RMA Females: 189
  8. GenEx BXD EtOH Liver Affy M430 2.0 (Feb11) RMA Males: 97
  9. GenEx BXD EtOH Liver Affy M430 2.0 (Feb11) RMA Both Sexes: 327
  10. GenEx BXD Sal Liver Affy M430 2.0 (Jan11) RMA Females: 274
  11. GenEx BXD Sal Liver Affy M430 2.0 (Jan11) RMA Males: 175
  12. GenEx BXD Sal Liver Affy M430 2.0 (Jan11) RMA Both Sexes: 444
  13. GenEx BXD EtOH Liver Affy M430 2.0 (Jan11) RMA Females: 139
  14. GenEx BXD EtOH Liver Affy M430 2.0 (Jan11) RMA Males: 73
  15. GenEx BXD EtOH Liver Affy M430 2.0 (Jan11) RMA Both Sexes: 230

 



About the cases used to generate this set of data:


About the tissue used to generate this set of data:


About the array platform:


About data values and data processing:


Notes:

A total of 239 probe sets have LRS >46. Maximum LRS of 124.5. Perfect concordance between phenotype of probe set and genotype for St3gal4 on Chr 9 at 34.9 Mb.

Xist expression is uniformly high in BXD55 and BXD70 using probe set 1427262_at, but this is probably due to ethanol effect. Note that Eif2s3y indicates all strains have balanced male and female data.



Experiment Type:


Contributor:


Citation:


Data source acknowledgment:


Study Id:
103

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