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Data Set Group: INIA LCM (11 Regions) RNA-seq Transcript Level (Dec15) modify this page

Data Set: INIA LCM (11 Regions) CIE/AIR/BAS RNA-seq Transcript Level (Dec15) modify this page
GN Accession: GN776
GEO Series: No Geo series yet
Organism: Mouse (mm10)
Group: BXD
Tissue: LCM Brain Regions mRNA
Dataset Status: Private
Platforms: ABI 550XL Wildfire
Normalization: RNA-seq
Contact Information
Megan Mulligan
University of Tennessee Health Science Center
855 Monroe Ave Suite 515
Memphis, Tennessee 38163 United States
Tel. 5126802386
Download datasets and supplementary data files

Specifics of this Data Set:


This dataset is private. Please refer to the contact information above if you have questions regarding the status of data

About the cases used to generate this set of data:

About the tissue used to generate this set of data:

About the array platform:

(Updated Dec 9, 2015 by AC and RW)

Annotation data were downloaded from ENSEMBL by Arthur Centeno, December 2015. We downloaded the entire transcript database at http://useast.ensembl.org/Mus_musculus/Info/Index.

The positions of transcripts and genes on the mouse assembly are version GRCm38.p4 (mm10 equivalent). However, we converted all chromosome coordinates to the mm9 assembly to be consistent with all other GN1 data sets. However, for some sequences, mostly on Chr Y and the mitochondrial genome, the values are mm10 equivalent (we had no corresponding mm9 values).

We also extracted sequence data corresponding to the transcripts whenever these data were available. However in some cases we do not have sequence data at all.

About data values and data processing:


Experiment Type:



Data source acknowledgment:

Study Id:

CITG Web services initiated January, 1994 as Portable Dictionary of the Mouse Genome; June 15, 2001 as WebQTL; and Jan 5, 2005 as GeneNetwork. This site is currently operated by Rob Williams, Pjotr Prins, Zachary Sloan, Arthur Centeno. Design and code by Pjotr Prins, Zach Sloan, Arthur Centeno, Danny Arends, Christian Fischer, Sam Ockman, Lei Yan, Xiaodong Zhou, Christian Fernandez, Ning Liu, Rudi Alberts, Elissa Chesler, Sujoy Roy, Evan G. Williams, Alexander G. Williams, Kenneth Manly, Jintao Wang, and Robert W. Williams, colleagues. Python Powered Registered with Nif
GeneNetwork support from:
  • The UT Center for Integrative and Translational Genomics
  • NIGMS Systems Genetics and Precision Medicine project (R01 GM123489, 2017-2021)
  • NIDA NIDA Core Center of Excellence in Transcriptomics, Systems Genetics, and the Addictome (P30 DA044223, 2017-2022)
  • NIA Translational Systems Genetics of Mitochondria, Metabolism, and Aging (R01AG043930, 2013-2018)
  • NIAAA Integrative Neuroscience Initiative on Alcoholism (U01 AA016662, U01 AA013499, U24 AA013513, U01 AA014425, 2006-2017)
  • NIDA, NIMH, and NIAAA (P20-DA 21131, 2001-2012)
  • NCI MMHCC (U01CA105417), NCRR, BIRN, (U24 RR021760)
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