Data Set Group2: GenEx BXD EtOH Liver Affy M430 2.0 (Sep12) MAS5
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Contact Information |
Robert Rooney
Genome Explorations Inc.
654 Jefferson Avenue
Memphis, TN 38105 USA
Tel. 901 578-5708
rrooney@genome-explorations.com
Website
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Download datasets and supplementary data files |
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Specifics of this Data Set: |
None
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Summary: |
These data generated by Dr. Robert Rooney, Kristin Hamre, Divyen Patel, and colleagues at Genome Explorations as part of an SBIR from NIAAA (2010-2011).
Data entered by Arthur Centeno, Jan and Feb 2011.
Data error checked by Robert W. Williams, Jan-May 2011.
eQTLs with LOD > 10
- UNC Agilent G4121A Liver LOWESS Stanford (Jan06) Females: 303
- UNC Agilent G4121A Liver LOWESS Stanford (Jan06) Males: 279
- UNC Agilent G4121A Liver LOWESS Stanford (Jan06) Both Sexes: 493
- GenEx BXD Sal Liver Affy M430 2.0 (Feb11) RMA Females: 320
- GenEx BXD Sal Liver Affy M430 2.0 (Feb11) RMA Males: 207
- GenEx BXD Sal Liver Affy M430 2.0 (Feb11) RMA Both Sexes: 513
- GenEx BXD EtOH Liver Affy M430 2.0 (Feb11) RMA Females: 189
- GenEx BXD EtOH Liver Affy M430 2.0 (Feb11) RMA Males: 97
- GenEx BXD EtOH Liver Affy M430 2.0 (Feb11) RMA Both Sexes: 327
- GenEx BXD Sal Liver Affy M430 2.0 (Jan11) RMA Females: 274
- GenEx BXD Sal Liver Affy M430 2.0 (Jan11) RMA Males: 175
- GenEx BXD Sal Liver Affy M430 2.0 (Jan11) RMA Both Sexes: 444
- GenEx BXD EtOH Liver Affy M430 2.0 (Jan11) RMA Females: 139
- GenEx BXD EtOH Liver Affy M430 2.0 (Jan11) RMA Males: 73
- GenEx BXD EtOH Liver Affy M430 2.0 (Jan11) RMA Both Sexes: 230
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About the cases used to generate this set of data: |
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About the tissue used to generate this set of data: |
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About the array platform: |
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About data values and data processing: |
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Notes: |
A total of 239 probe sets have LRS >46. Maximum LRS of 124.5. Perfect concordance between phenotype of probe set and genotype for St3gal4 on Chr 9 at 34.9 Mb.
Xist expression is uniformly high in BXD55 and BXD70 using probe set 1427262_at, but this is probably due to ethanol effect. Note that Eif2s3y indicates all strains have balanced male and female data.
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Experiment Type: |
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Contributor: |
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Citation: |
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Data source acknowledgment: |
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Study Id: |
103
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GeneNetwork support from:
- The UT Center for Integrative and Translational Genomics
- NIGMS Systems Genetics and Precision Medicine project (R01 GM123489, 2017-2021)
- NIDA NIDA Core Center of Excellence in Transcriptomics, Systems Genetics,
and the Addictome (P30 DA044223, 2017-2022)
- NIA Translational Systems Genetics of Mitochondria, Metabolism, and Aging (R01AG043930, 2013-2018)
- NIAAA Integrative Neuroscience Initiative on Alcoholism (U01 AA016662, U01 AA013499, U24 AA013513, U01 AA014425, 2006-2017)
- NIDA, NIMH, and NIAAA (P20-DA 21131, 2001-2012)
- NCI MMHCC (U01CA105417), NCRR, BIRN, (U24 RR021760)
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