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Data Set Group2: UTHSC Mouse BXD Gastrointestinal Affy MoGene 1.0 ST Gene and Exon Level (Apr14) RMA

Data Set: UTHSC Mouse BXD Gastrointestinal Affy MoGene 1.0 ST Exon Level (Apr14) RMA

GN Accession: GN597

GEO Series:

Title:

Organism: Mouse (Mus musculus, mm10)

Group: BXD

Tissue: Gastrointestinal mRNA

Dataset Status: Public

Platforms: Affy Mouse Gene 1.0 ST (GPL6246)

Normalization: RMA

Contact Information

Lu Lu
University of Tennessee Health Science Center
71 S. Manassas, Room 410K
Memphis, TN 38163 USA
Tel. 901 448-7557
lulu@uthsc.edu
Website

Download datasets and supplementary data files

Specifics of this Data Set:

Exon Level

Summary:

About the cases used to generate this set of data:

Index CaseID Strain Sex Coat Color Date of Birth Generation Sacrifice Date Age RNA
conc.(ug/ul) RNA Purity
260/280 RNA Integrity Number RIN Run Chip Notes

1 081910.14 B6D2F1 M black 06/10/2010 08/18/2010 69 0.5 2.00 8.40 y

2 081910.17 B6D2F1 M black 06/10/2010 08/18/2010 69 0.9 2.00 8.60

3 081910.18 B6D2F1 F black 06/10/2010 08/18/2010 69 0.3 1.80 9.30 y

4 081910.09 D2B6F1 F black 06/02/2010 08/18/2010 77 0.7 2.00 9.00 y

5 081910.23 D2B6F1 M black 06/02/2010 08/18/2010 77 10.2 2.02 8.50 y

6 081910.12 C57BL/6J F black 06/02/2010 08/18/2010 77 0.6 1.90 n/a y

7 081910.25 C57BL/6J M black 06/02/2010 08/18/2010 77 3.4 2.03 y

8 081910.39 C57BL/6J F black 06/02/2010 08/18/2010 77 2.30 1.99 8.50 y

9 081910.41 C57BL/6J M black 06/18/2010 08/18/2010 61 2.20 2.02 8.60 y

10 081910.29 DBA/2J F dilute brown DBA 06/02/2010 08/18/2010 77 2.9 2.03 8.50 y need one more female

11 081910.31 DBA/2J M dilute brown DBA 06/11/2010 08/18/2010 68 8.6 2.06 8.00 y

12 081910.43 DBA/2J M dilute brown DBA 05/06/2010 08/18/2010 104 2.30 2.01 9.30 y

13 081810.08 BXD1 M dilute brown DBA 05/24/2010 142 08/17/2010 85 0.6 1.92 8.50 y

14 081810.13 BXD1 F dilute brown DBA 06/07/2010 139 08/17/2010 71 0.7 9.00 y

15 081710.91 BXD11 M black 06/02/2010 137 08/17/2010 76 0.7 1.93 8.20 y

16 081710.97 BXD11 F black 05/22/2010 136 08/17/2010 87 1.0 1.95 8.90 y

17 081810.23 BXD12 M gray 06/01/2010 122 08/17/2010 77 0.9 2.00 8.00 y

18 081810.44 BXD12 F gray 06/01/2010 122 08/18/2010 78 0.8 1.93 8.30 y

19 081810.33 BXD14 F black 05/29/2010 142 08/17/2010 80 1.2 1.97 8.10 y

20 081810.52 BXD14 M black 05/29/2010 142 08/18/2010 81 0.4 1.90 9.00 y

21 081810.19 BXD24 F brown 05/24/2010 90 08/17/2010 85 0.3 1.90 9.10 y This strain comes from UTHSC colony since 2008. So they are probably blind.

22 081810.42 BXD24 M brown 05/24/2010 90 08/17/2010 85 0.7 2.00 8.50 y This strain comes from UTHSC colony since 2008. So they are probably blind.

23 081710.99 BXD27 M dilute brown DBA 06/05/2010 162 08/17/2010 73 1.3 1.95 8.40 y need one more female

24 081810.04 BXD29 M gray 06/07/2010 25 08/17/2010 71 0.5 1.91 8.40 y

25 081810.10 BXD29 F gray 06/07/2010 25 08/17/2010 71 0.6 1.97 8.70 y

26 081810.18 BXD31 M black 06/05/2010 130 08/17/2010 73 0.5 1.88 8.70 y

27 081810.40 BXD31 F black 06/05/2010 130 08/17/2010 73 1.1 2.00 7.00 y

28 081610.76 BXD32 F black 05/29/2010 116 08/18/2010 81 3.8 2.05 9.10 y need one more male

29 081810.26 BXD34 M black 06/02/2010 63 08/17/2010 76 1.3 1.98 8.20 y

30 081810.29 BXD34 M black 06/02/2010 63 08/17/2010 76 0.7 1.93 8.50

31 081810.46 BXD34 F black 06/02/2010 63 08/18/2010 77 1.0 2.00 7.10 y

32 081810.36 BXD39 M gray 05/31/2010 68 08/17/2010 78 0.6 1.94 8.20 y

33 081810.55 BXD39 F gray 05/31/2010 68 08/18/2010 79 0.8 1.96 8.40 y

34 081910.03 BXD40 F gray 05/25/2010 58 08/18/2010 85 1.2 2.00 8.80 y

35 081910.06 BXD40 M gray 05/25/2010 58 08/18/2010 85 0.7 1.90 8.80 y

36 081810.31 BXD42 F black 05/23/2010 64 08/17/2010 86 0.9 1.95 8.30 y

37 081810.48 BXD42 M black 05/23/2010 64 08/18/2010 87 0.8 1.93 8.90 y

38 081710.47 BXD43 M black 05/28/2010 44 08/17/2010 81 1.2 1.95 8.10 y

39 081710.48 BXD43 F black 05/28/2010 44 08/17/2010 81 1.7 1.96 8.90 y

40 081710.49 BXD43 F black 05/28/2010 44 08/17/2010 81 1.2 1.95 8.50

41 081710.23 BXD44 F brown 05/26/2010 41 08/17/2010 83 1.1 1.96 8.30 y

42 081710.24 BXD44 F brown 05/26/2010 41 08/17/2010 83 0.9 1.92 8.70

43 081710.30 BXD44 M dilute brown DBA 05/26/2010 41 08/17/2010 83 1.3 1.97 8.20 y

44 081710.31 BXD44 M dilute brown DBA 05/26/2010 41 08/17/2010 83 1.6 1.98 8.30

45 081710.32 BXD44 M dilute brown DBA 05/26/2010 41 08/17/2010 83 0.8 1.95 8.80

46 081710.51 BXD45 M dilute brown DBA 06/01/2010 39 08/17/2010 77 1.2 1.94 7.80 y

47 081710.54 BXD45 F dilute brown DBA 06/01/2010 39 08/17/2010 77 1.0 1.94 7.30 y

48 081610.14 BXD48 F black 06/03/2010 40 08/18/2010 76 2.2 2.01 9.50 y

49 081610.17 BXD48 M black 06/03/2010 40 08/18/2010 76 3.3 2.05 8.20 y

50 081710.29 BXD49 M gray 05/25/2010 49 08/17/2010 84 1.6 1.97 7.10 y

51 081710.34 BXD49 F gray 05/25/2010 24 08/17/2010 84 1.0 1.95 8.50 y

52 081610.29 BXD50 F black 06/02/2010 35 08/18/2010 77 3.3 2.05 8.40 y

53 081610.32 BXD50 M black 06/02/2010 35 08/18/2010 77 9.1 2.03 8.40 y

54 081610.36 BXD56 M black 06/02/2010 34 08/18/2010 77 1.9 2.02 9.60 y

55 081610.77 BXD56 F black 05/26/2010 34 08/18/2010 84 3.4 2.05 8.20 y

56 081610.80 BXD56 F black 05/26/2010 33 08/18/2010 84 3.2 2.05 8.50

57 081710.67 BXD60 M brown 06/08/2010 43 08/17/2010 70 0.9 1.91 8.40 y need one more female

58 081810.83 BXD62 M brown 05/27/2010 41 08/18/2010 83 0.5 1.95 8.10 y need one more female

59 081610.22 BXD63 M dilute brown DBA 06/02/2010 31 08/18/2010 77 6.9 2.07 8.50 y

60 081610.25 BXD63 F dilute brown DBA 06/02/2010 31 08/18/2010 77 2.2 2.00 8.70 y

61 081610.03 BXD65 M brown 05/26/2010 32 08/18/2010 84 11.2 2.03 8.70 y

62 081610.11 BXD65 F brown 05/26/2010 32 08/18/2010 84 3.1 2.03 9.10 y

63 081610.96 BXD68 F brown 06/03/2010 33 08/18/2010 76 4.0 2.03 8.20 y

64 081610.99 BXD68 M brown 06/03/2010 33 08/18/2010 76 3.4 2.09 7.80 y

65 081710.71 BXD69 M dilute brown DBA 05/29/2010 41 08/17/2010 80 1.3 1.96 7.90 y

66 081710.78 BXD69 F dilute brown DBA 06/09/2010 42 08/17/2010 69 0.8 1.90 8.50 y

67 081610.85 BXD70 M dilute brown DBA 06/03/2010 36 08/18/2010 76 4.6 1.99 9.40 y

68 081610.92 BXD70 F dilute brown DBA 06/03/2010 36 08/18/2010 76 3.1 2.07 8.50 y

69 081910.33 BXD71 F dilute brown DBA 06/03/2010 35 08/18/2010 76 2.8 2.05 8.00 y

70 081910.38 BXD71 M dilute brown DBA 06/03/2010 35 08/18/2010 76 4.6 2.02 8.30 y

71 081710.81 BXD73 F dilute brown DBA 05/26/2010 44 08/17/2010 83 0.8 1.90 8.60 y

72 081710.83 BXD73 M dilute brown DBA 05/26/2010 41 08/17/2010 83 0.8 1.91 8.40 y

73 081810.58 BXD75 M dilute brown DBA 06/03/2010 39 08/18/2010 76 0.8 1.95 8.70 y

74 081810.73 BXD75 F dilute brown DBA 06/03/2010 39 08/18/2010 76 0.7 1.92 9.30 y

75 081710.06 BXD79 F gray 05/23/2010 24 08/18/2010 87 2.9 2.04 8.60 y

76 081710.08 BXD79 M gray 05/23/2010 24 08/18/2010 87 2.1 2.01 9.40 y

77 081710.87 BXD80 F dilute brown DBA 06/05/2010 33 08/17/2010 73 1.2 1.95 8.20 y

78 081710.88 BXD80 M dilute brown DBA 06/05/2010 33 08/17/2010 73 0.8 1.91 8.00 y

79 081610.64 BXD83 M dilute brown DBA 05/29/2010 32 08/18/2010 81 2.5 2.04 8.50 y

80 081610.69 BXD83 F dilute brown DBA 05/29/2010 32 08/18/2010 81 2.7 2.05 8.20 y

81 081810.80 BXD84 F dilute brown DBA 06/03/2010 31 08/18/2010 76 0.9 1.96 8.80 y need one more male

82 081710.10 BXD85 F dilute brown DBA 06/05/2010 40 08/18/2010 74 3.7 2.04 7.90 y

83 081710.13 BXD85 M dilute brown DBA 06/05/2010 40 08/18/2010 74 2.9 2.06 8.40 y

84 081610.60 BXD87 M black 05/27/2010 35 08/18/2010 83 3.4 2.04 8.30 y

85 081610.63 BXD87 F black 05/27/2010 35 08/18/2010 83 3.1 2.05 8.40 y

86 081610.40 BXD89 M dilute brown DBA 05/28/2010 36 08/18/2010 82 2.6 2.05 8.50 y need one more female

87 081610.53 BXD90 F dilute brown DBA 05/28/2010 39 08/18/2010 82 9.1 2.06 8.60 y

88 081610.57 BXD90 M dilute brown DBA 05/28/2010 39 08/18/2010 82 2.1 2.02 9.40 y

89 081610.87 BXD92A F brown 05/24/2010 42 08/18/2010 86 2.6 2.05 8.60 y

90 081610.93 BXD92A M brown 05/21/2010 42 08/18/2010 89 8.5 2.07 8.80 y

91 081910.32 BXD95 M dilute brown DBA 06/03/2010 25 08/18/2010 76 2.7 2.05 9.20 y

92 081610.81 BXD95 F dilute brown DBA 06/03/2010 25 08/18/2010 76 3.2 2.07 8.70 y

93 081610.84 BXD95 M dilute brown DBA 06/03/2010 25 08/18/2010 76 13.3 1.97 7.70

94 081610.47 BXD97 F brown 06/08/2010 35 08/18/2010 71 2.3 2.00 9.10 y need one more male

95 081610.06 BXD99 F dilute brown DBA 06/02/2010 28 08/18/2010 77 4.2 2.01 9.00 y

96 081610.20 BXD99 M dilute brown DBA 06/02/2010 28 08/18/2010 77 2.2 2.00 8.90 y

97 081810.63 BXD100 M black 05/27/2010 30 08/18/2010 83 0.7 1.90 8.60 y

98 081810.75 BXD100 F black 05/27/2010 30 08/18/2010 83 0.9 1.95 8.10 y

99 081710.14 BXD101 M gray 05/21/2010 27 08/18/2010 89 2.9 2.05 8.90 y

100 081710.19 BXD101 F gray 05/21/2010 27 08/18/2010 89 3.2 2.06 8.30 y

101 081710.41 BXD102 F brown 05/21/2010 25 08/17/2010 88 1.5 1.95 7.70 y

102 081710.45 BXD102 M brown 05/21/2010 25 08/17/2010 88 1.2 1.97 7.70 y

103 081710.58 BXD103 M dilute brown DBA 05/31/2010 21 08/17/2010 78 1.1 1.94 8.40 y

104 081710.62 BXD103 F dilute brown DBA 05/31/2010 21 08/17/2010 78 0.6 1.91 8.40 y

About the tissue used to generate this set of data:

Approximately two equal-sized segments of the small intestine were pooled per animal: one taken from the proximal jejunum and one from the distal ileum. We did generate a second data set (not in GeneNetwork) for different segments of the the GI tract from stomach to distal colon for C57BL/6J and DBA/2J parental strains. These additional data are available upon request from Drs. Dennis Black and Lu Lu.

About the array platform:

[MoGene-1_0-st] Affymetrix Mouse Gene 1.0 ST Array [transcript (gene) version]

About data values and data processing:

This dataset includes Gene and Exon level RMA normalization.

Notes:

Experiment Type:

Contributor:

Citation:

Data source acknowledgment:

Study Id:

188

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