Data Set Group2: UT Hippocampus Affy RaEx 1.0 Exon (Jul09)
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Contact Information |
Robert Williams
University of Tennessee Health Science Center
71 S Manassas St, Room 405 TSRB
Memphis, TN 38163 USA
Tel. 901 448-7050
rwilliams@uthsc.edu
Website
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Download datasets and supplementary data files |
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Specifics of this Data Set: |
None
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Summary: |
The HXB/BXH data provides estimates of Hippocampus mRNA expression. Affymetrix Rat Exon 1.0ST microarrays were used for hybridization using standard procedures. Total of 68 samples come from 30 BXH/HXB strain (one male and one female) and 2 parental strains (two males and two females).
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About the cases used to generate this set of data: |
Index |
run order |
case ID |
strain |
RNA ID |
Tube ID |
tissue |
out ID |
BORN |
SEX |
age |
from |
Extracted |
RIN |
260:280 |
260:230 |
ng/ul |
8ug |
1 |
1 |
100908.03 |
BN.Lx |
R5448H |
R5448H1 |
hippo |
BN.Lx |
12/25/10 |
female 1 |
6 weeks |
Pravence's lab |
3/14/13 |
|
2.03 |
2.2 |
1042.14 |
8 |
2 |
16 |
100908.02 |
BN.Lx |
R5446H |
R5446H1 |
hippo |
BN.Lx |
12/25/10 |
male 2 |
6 weeks |
Pravence's lab |
3/14/13 |
|
2.02 |
2.24 |
392.64 |
20 |
3 |
57 |
100908.04 |
BN.Lx |
R5450H |
R5450H1 |
hippo |
BN.Lx |
12/25/10 |
female 2 |
6 weeks |
Pravence's lab |
3/14/13 |
|
2.06 |
2.18 |
1233.45 |
6 |
4 |
68 |
100908.01 |
BN.Lx |
R5444H |
R5444H1 |
hippo |
BN.Lx |
12/25/10 |
male 1 |
6 weeks |
Pravence's lab |
3/14/13 |
|
2.05 |
2.05 |
640.56 |
12 |
5 |
3 |
101308.03 |
BXH10 |
R5390H |
R5390H1 |
hippo |
RI 10C |
6/8/11 |
female 1 |
6 weeks |
Pravence's lab |
3/4/13 |
|
1.97 |
2.26 |
444.35 |
18 |
6 |
66 |
101308.01 |
BXH10 |
R5386H |
R5386H1 |
hippo |
RI 10C |
2/6/11 |
male 1 |
6 weeks |
Pravence's lab |
3/4/13 |
|
2.04 |
2.25 |
746.6 |
11 |
7 |
5 |
110608.19 |
BXH11 |
R5380H |
R5380H1 |
hippo |
RI 11C |
5/25/11 |
female 1 |
6 weeks |
Pravence's lab |
3/4/13 |
|
1.97 |
2.35 |
269.58 |
30 |
8 |
64 |
110608.17 |
BXH11 |
R5378H |
R5378H1 |
hippo |
RI 11C |
5/25/11 |
male 1 |
6 weeks |
Pravence's lab |
3/4/13 |
|
2.04 |
2.28 |
811.02 |
10 |
9 |
7 |
110608.23 |
BXH12 |
R5384H |
R5384H1 |
hippo |
RI 12C |
3/26/11 |
female 1 |
6 weeks |
Pravence's lab |
3/4/13 |
|
2.06 |
2.28 |
923.13 |
9 |
10 |
62 |
110608.21 |
BXH12 |
R5382H |
R5382H1 |
hippo |
RI 12C |
3/26/11 |
male 1 |
6 weeks |
Pravence's lab |
3/4/13 |
|
1.96 |
2.33 |
260.39 |
31 |
11 |
9 |
101508.19 |
BXH13 |
R5438H |
R5438H1 |
hippo |
RI 13C |
4/20/11 |
female 1 |
6 weeks |
Pravence's lab |
3/10/13 |
|
1.98 |
2.33 |
274.04 |
29 |
12 |
60 |
101508.17 |
BXH13 |
R5436H |
R5436H1 |
hippo |
RI 13C |
4/20/11 |
male 1 |
6 weeks |
Pravence's lab |
3/10/13 |
|
1.98 |
2.26 |
334.92 |
24 |
13 |
11 |
110608.27 |
BXH2 |
R5462H |
R5462H1 |
hippo |
RI 2C |
4/1/11 |
female 1 |
6 weeks |
Pravence's lab |
3/14/13 |
|
2.06 |
2.3 |
1050.29 |
8 |
14 |
58 |
110608.25 |
BXH2 |
R5464H |
R5464H1 |
hippo |
RI 2C |
4/1/11 |
male 1 |
6 weeks |
Pravence's lab |
3/14/13 |
|
2.04 |
2.29 |
804.77 |
10 |
15 |
56 |
100908.05 |
BXH3 |
R5452H |
R5452H1 |
hippo |
RI 3C |
1/14/11 |
male 1 |
6 weeks |
Pravence's lab |
3/5/13 |
|
1.97 |
2.36 |
306.01 |
26 |
16 |
59 |
100908.08 |
BXH3 |
R5394H |
R5394H1 |
hippo |
RI 3C |
1/14/11 |
female 2 |
6 weeks |
Pravence's lab |
3/5/13 |
|
1.97 |
2.28 |
409.78 |
20 |
17 |
13 |
110608.31 |
BXH5 |
R5368H |
R5368H1 |
hippo |
RI 5C |
4/1/11 |
female 1 |
6 weeks |
Pravence's lab |
3/3/13 |
|
2.07 |
2.3 |
1235.02 |
6 |
18 |
54 |
110608.29 |
BXH5 |
R5366H |
R5366H1 |
hippo |
RI 5C |
4/1/11 |
male 1 |
6 weeks |
Pravence's lab |
3/3/13 |
|
2.04 |
2.28 |
905 |
9 |
19 |
15 |
110608.11 |
BXH6 |
R5372H |
R5372H1 |
hippo |
RI 6C |
6/4/11 |
female 1 |
6 weeks |
Pravence's lab |
3/3/13 |
|
2.05 |
1.95 |
692.63 |
12 |
20 |
52 |
110608.09 |
BXH6 |
R5370H |
R5370H1 |
hippo |
RI 6C |
6/4/11 |
male 1 |
6 weeks |
Pravence's lab |
3/3/13 |
8.1 |
2.06 |
2.08 |
954.85 |
8 |
21 |
17 |
112008.07 |
BXH8 |
R5360H |
R5360H1 |
hippo |
RI 8C |
4/17/11 |
female 1 |
6 weeks |
Pravence's lab |
2/28/13 |
9.1 |
2.07 |
2.27 |
1127.86 |
7 |
22 |
50 |
112008.05 |
BXH8 |
R5358H |
R5358H1 |
hippo |
RI 8C |
4/17/11 |
male 1 |
6 weeks |
Pravence's lab |
2/28/13 |
9.1 |
2.08 |
2.2 |
682.5 |
12 |
23 |
19 |
110608.15 |
BXH9 |
R5376H |
R5376H1 |
hippo |
RI 9C |
6/16/11 |
female 1 |
6 weeks |
Pravence's lab |
3/3/13 |
9.5 |
2.08 |
2.24 |
736.93 |
11 |
24 |
48 |
110608.13 |
BXH9 |
R5374H |
R5374H1 |
hippo |
RI 9C |
6/16/11 |
male 1 |
6 weeks |
Pravence's lab |
3/3/13 |
8.9 |
1.98 |
2.25 |
434.51 |
18 |
25 |
21 |
110608.03 |
HXB1 |
R5422H |
R5422H1 |
hippo |
RI 1 |
3/13/11 |
female 1 |
6 weeks |
Pravence's lab |
3/10/13 |
|
1.99 |
2.22 |
401.83 |
20 |
26 |
46 |
110608.01 |
HXB1 |
R5420H |
R5420H1 |
hippo |
RI 1 |
3/13/11 |
male 1 |
6 weeks |
Pravence's lab |
3/10/13 |
|
1.97 |
2.29 |
351.01 |
23 |
27 |
23 |
112008.51 |
HXB10 |
R5470H |
R5470H1 |
hippo |
RI 10 |
3/30/11 |
female 1 |
6 weeks |
Pravence's lab |
3/17/13 |
|
2.04 |
2.26 |
743.27 |
11 |
28 |
44 |
112008.49 |
HXB10 |
R5472H |
R5472H1 |
hippo |
RI 10 |
3/30/11 |
male 1 |
6 weeks |
Pravence's lab |
3/17/13 |
|
2.05 |
2.21 |
958.07 |
8 |
29 |
25 |
112008.55 |
HXB13 |
R5352H |
R5352H1 |
hippo |
RI 13 |
3/3/11 |
female 1 |
6 weeks |
Pravence's lab |
2/28/13 |
|
2.06 |
2.13 |
306.01 |
26 |
30 |
42 |
112008.53 |
HXB13 |
R5350H |
R5350H1 |
hippo |
RI 13 |
3/3/11 |
male 1 |
6 weeks |
Pravence's lab |
2/28/13 |
9.1 |
2.09 |
2.24 |
965.01 |
8 |
31 |
27 |
112008.11 |
HXB15 |
R5414H |
R5414H1 |
hippo |
RI 15 |
1/22/11 |
female 1 |
6 weeks |
Pravence's lab |
3/6/13 |
8.7 |
2.03 |
2.31 |
788.08 |
10 |
32 |
40 |
112008.09 |
HXB15 |
R5412H |
R5412H1 |
hippo |
RI 15 |
1/22/11 |
male 1 |
6 weeks |
Pravence's lab |
3/6/13 |
|
2.05 |
2.3 |
1041.66 |
8 |
33 |
29 |
112008.47 |
HXB17 |
R5474H |
R5474H1 |
hippo |
RI 17 |
4/13/11 |
female 1 |
6 weeks |
Pravence's lab |
3/17/13 |
|
2.03 |
2.28 |
758.42 |
11 |
34 |
38 |
112008.45 |
HXB17 |
R5476H |
R5476H1 |
hippo |
RI 17 |
4/13/11 |
male 1 |
6 weeks |
Pravence's lab |
3/17/13 |
|
2.05 |
2.27 |
1112.55 |
7 |
35 |
14 |
112008.22 |
HXB18 |
R5409H |
R5409H1 |
hippo |
RI 18 |
2/2/11 |
male 1 |
6 weeks |
Pravence's lab |
3/6/13 |
|
2.06 |
2.27 |
1281.26 |
6 |
36 |
31 |
112008.23 |
HXB18 |
R5410H |
R5410H1 |
hippo |
RI 18 |
2/2/11 |
female 1 |
6 weeks |
Pravence's lab |
3/6/13 |
8.9 |
1.98 |
2.29 |
356.56 |
22 |
37 |
36 |
112008.13 |
HXB2 |
R5416H |
R5416H1 |
hippo |
RI 2 |
1/10/11 |
male 1 |
6 weeks |
Pravence's lab |
3/6/13 |
8.2 |
2.06 |
2.3 |
1471.72 |
5 |
38 |
67 |
112008.15 |
HXB2 |
R5418H |
R5418H1 |
hippo |
RI 2 |
1/10/11 |
female1 |
6 weeks |
Pravence's lab |
3/6/13 |
|
2.01 |
2.29 |
690.65 |
12 |
39 |
33 |
112008.19 |
HXB20 |
R5406H |
R5406H1 |
hippo |
RI 20 |
5/24/11 |
female 1 |
6 weeks |
Pravence's lab |
3/6/13 |
|
2.07 |
2.24 |
1386.52 |
6 |
40 |
34 |
112008.17 |
HXB20 |
R5404H |
R5404H1 |
hippo |
RI 20 |
2/16/11 |
male 1 |
6 weeks |
Pravence's lab |
3/6/13 |
8.6 |
2.05 |
2.26 |
1072.81 |
7 |
41 |
12 |
101508.02 |
HXB21 |
R5458H |
R5458H1 |
hippo |
RI 21 |
2/3/11 |
male 2 |
6 weeks |
Pravence's lab |
3/14/13 |
|
2 |
2.23 |
791.4 |
10 |
42 |
35 |
101508.04 |
HXB21 |
R5460H |
R5460H1 |
hippo |
RI 21 |
2/3/11 |
female 1 |
6 weeks |
Pravence's lab |
3/14/13 |
|
1.97 |
2.29 |
413.19 |
19 |
43 |
32 |
112008.33 |
HXB22 |
R5484H |
R5484H1 |
hippo |
RI 22 |
4/5/11 |
male 1 |
6 weeks |
Pravence's lab |
3/18/13 |
|
2.08 |
2.16 |
755.61 |
11 |
44 |
37 |
112008.35 |
HXB22 |
R5482H |
R5482H1 |
hippo |
RI 22 |
4/5/11 |
female 1 |
6 weeks |
Pravence's lab |
3/18/13 |
|
2.02 |
2.3 |
978.86 |
8 |
45 |
10 |
101508.06 |
HXB23 |
R5454H |
R5454H1 |
hippo |
RI 23 |
3/15/11 |
male 2 |
6 weeks |
Pravence's lab |
3/14/13 |
|
2.05 |
2.3 |
1052.18 |
8 |
46 |
61 |
101508.08 |
HXB23 |
R5456H |
R5456H1 |
hippo |
RI 23 |
3/15/11 |
female 2 |
6 weeks |
Pravence's lab |
3/14/13 |
|
2.06 |
2.27 |
1281.26 |
6 |
47 |
30 |
100908.09 |
HXB24 |
R5396H |
R5396H1 |
hippo |
RI 24 |
2/6/11 |
male 1 |
6 weeks |
Pravence's lab |
3/5/13 |
8.4 |
2.08 |
1.74 |
764.68 |
10 |
48 |
39 |
100908.11 |
HXB24 |
R5400H |
R5400H1 |
hippo |
RI 24 |
2/15/11 |
female 1 |
6 weeks |
Pravence's lab |
3/5/13 |
8.8 |
2.04 |
2.26 |
906.15 |
9 |
49 |
28 |
101508.09 |
HXB25 |
R5428H |
R5428H1 |
hippo |
RI 25 |
3/1/11 |
male 1 |
6 weeks |
Pravence's lab |
3/10/13 |
8.5 |
2.05 |
2.3 |
966.92 |
8 |
50 |
41 |
101508.11 |
HXB25 |
R5430H |
R5430H1 |
hippo |
RI 25 |
3/1/11 |
female 1 |
6 weeks |
Pravence's lab |
3/10/13 |
|
2.03 |
2.3 |
811.64 |
10 |
51 |
8 |
101508.22 |
HXB27 |
R5441H |
R5441H1 |
hippo |
RI 27 |
4/19/11 |
male 1 |
6 weeks |
Pravence's lab |
3/10/13 |
|
2.02 |
2.24 |
428.61 |
19 |
52 |
43 |
101508.23 |
HXB27 |
R5442H |
R5442H1 |
hippo |
RI 27 |
4/19/11 |
female 1 |
6 weeks |
Pravence's lab |
3/10/13 |
|
2.02 |
2.27 |
767.32 |
10 |
53 |
6 |
112008.26 |
HXB29 |
R5364H |
R5364H1 |
hippo |
RI 29 |
2/13/11 |
male 2 |
6 weeks |
Pravence's lab |
3/3/13 |
|
2.06 |
2.29 |
961 |
8 |
54 |
63 |
112008.28 |
HXB29 |
R5362H |
R5362H1 |
hippo |
RI 29 |
2/13/11 |
female 2 |
6 weeks |
Pravence's lab |
3/3/13 |
8.8 |
2.07 |
2.26 |
830.15 |
10 |
55 |
26 |
112008.37 |
HXB3 |
R5480H |
R5480H1 |
hippo |
RI 3 |
3/16/11 |
male 1 |
6 weeks |
Pravence's lab |
3/18/13 |
8.7 |
2.05 |
2.26 |
1169.97 |
7 |
56 |
45 |
112008.39 |
HXB3 |
R5478H |
R5478H1 |
hippo |
RI 3 |
3/16/11 |
female 1 |
6 weeks |
Pravence's lab |
3/18/13 |
|
2.01 |
2.18 |
864.52 |
9 |
57 |
4 |
112008.30 |
HXB31 |
R5347H |
R5347H1 |
hippo |
RI 31 |
3/27/11 |
male 2 |
6 weeks |
Pravence's lab |
2/28/13 |
|
2.1 |
2.29 |
881.39 |
9 |
58 |
47 |
112008.31 |
HXB31 |
R5348H |
R5348H1 |
hippo |
RI 31 |
3/27/11 |
female 1 |
6 weeks |
Pravence's lab |
2/28/13 |
|
1.96 |
2.37 |
194.23 |
41 |
59 |
24 |
101508.13 |
HXB4 |
R5432H |
R5432H1 |
hippo |
RI 4 |
2/25/11 |
male 1 |
6 weeks |
Pravence's lab |
3/10/13 |
8.4 |
2.06 |
2.29 |
1345.87 |
6 |
60 |
49 |
101508.15 |
HXB4 |
R5434H |
R5434H1 |
hippo |
RI 4 |
2/25/11 |
female 1 |
6 weeks |
Pravence's lab |
3/10/13 |
|
2.05 |
2.21 |
663.4 |
12 |
61 |
22 |
112008.41 |
HXB5 |
R5468H |
R5468H1 |
hippo |
RI 5 |
4/20/11 |
male 1 |
6 weeks |
Pravence's lab |
3/17/13 |
|
2.05 |
2.26 |
961.62 |
8 |
62 |
51 |
112008.43 |
HXB5 |
R5466H |
R5466H1 |
hippo |
RI 5 |
4/20/11 |
female 1 |
6 weeks |
Pravence's lab |
3/17/13 |
|
1.99 |
2.32 |
349.47 |
23 |
63 |
20 |
110608.05 |
HXB7 |
R5424H |
R5424H1 |
hippo |
RI 7 |
1/19/11 |
male 1 |
6 weeks |
Pravence's lab |
3/10/13 |
8.5 |
2.04 |
2.29 |
911.71 |
9 |
64 |
53 |
110608.07 |
HXB7 |
R5426H |
R5426H1 |
hippo |
RI 7 |
3/28/11 |
female 1 |
6 weeks |
Pravence's lab |
3/10/13 |
|
1.97 |
2.28 |
423.45 |
19 |
65 |
2 |
112008.02 |
SHR |
R5355H |
R5355H1 |
hippo |
SHR |
12/25/10 |
male 2 |
6 weeks |
Pravence's lab |
2/28/13 |
|
2.08 |
2.24 |
684.67 |
12 |
66 |
18 |
112008.01 |
SHR |
R5354H |
R5354H1 |
hippo |
SHR |
12/25/10 |
male 1 |
6 weeks |
Pravence's lab |
2/28/13 |
|
2.07 |
2.29 |
728.58 |
11 |
67 |
55 |
112008.03 |
SHR |
R5356H |
R5356H1 |
hippo |
SHR |
12/25/10 |
female 1 |
6 weeks |
Pravence's lab |
2/28/13 |
|
1.97 |
2.36 |
265.66 |
30 |
68 |
65 |
112008.04 |
SHR |
R5357H |
R5357H1 |
hippo |
SHR |
12/25/10 |
female 2 |
6 weeks |
Pravence's lab |
2/28/13 |
|
2.05 |
2.29 |
967.24 |
8 |
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About the tissue used to generate this set of data: |
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About the array platform: |
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About data values and data processing: |
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Notes: |
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Experiment Type: |
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Contributor: |
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Citation: |
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Data source acknowledgment: |
Data were generated with NIAAA grants U01AA13499 to Robert W. Williams and a grant to Gerd Kempermann, Genomics of Regeneration in the Central Nervous System, Center for Regenerative Therapies, Dresden.
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Study Id: |
76
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- NIA Translational Systems Genetics of Mitochondria, Metabolism, and Aging (R01AG043930, 2013-2018)
- NIAAA Integrative Neuroscience Initiative on Alcoholism (U01 AA016662, U01 AA013499, U24 AA013513, U01 AA014425, 2006-2017)
- NIDA, NIMH, and NIAAA (P20-DA 21131, 2001-2012)
- NCI MMHCC (U01CA105417), NCRR, BIRN, (U24 RR021760)
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