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Probe Information

The table below lists information of all probes of probe set 17852718 from database FGUCAS BXH/HXB Brown Adipose Affy Rat Gene 2.0 ST (May16) **.

QTL Heat Map and ClusteringCorrelation Matrix and PCA

Probe1
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Sequence2
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bl2seq3Exons4Tm °C5
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Stacking Energy KBT6Mean7
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Stdev8
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Probe h29
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Probe Location10SNPs
(Across all strains)
11
SNPs
(Different alleles only between BN-Lx/Cub and SHR/OlaIpcv)
11
GSB
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NSB
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ChrStartEnd
1 1761777TCATCTCTGGCCATCAAGGGTTGCA
2 417252GATCTTCTCTGCAGGAACACGCATG
3 1642947TACCCTACGGTGGTGGCAGTAGCCA
4 246291CAATGTACTTCACACTTTGGATGGC
5 1615067GATGGGACACATTAGCCACTGGCCG
6 2438582TGGTGCTGACCACCGAAGCACAGCT
7 1549317GAACTCCACCCCTTGGTAGTCAGAG
8 2329065GGACAACACAGCGTCGACAGACTCA
9 818626TTTGAGAGCTCAGCGCCGTAGAAGG
10 1518856CAGGTGAGCCTCGATGAACAGTGCA
11 1996049GGTTGGTTTCCATGATCTGGTTTAC
12 77647AAGGAAGGCCGTGGTACTCCAGCTG
13 1208020TATAGTGCTATTGAGGAAGTGCCCT
14 1901745GCGGCGGGAGCAGCACAACACCCAT
15 629428GAAGGTCCTCGTCTTAGGAGTGTCC
16 1083747CATTCTGTGCTTTCATGTTTTCGGC
17 1839121CAGGCGACGGATGTACAGCGAGTAC
18 517859TCCTTGCAGCTTTTGGAGTCTGCAC
19 1793614CACTCTGGTGCTGACCACCGAAGCA
20 461548TCGAACAGGTACTGGAACAGGCGGT

CITG Web services initiated January, 1994 as Portable Dictionary of the Mouse Genome; June 15, 2001 as WebQTL; and Jan 5, 2005 as GeneNetwork. This site is currently operated by Rob Williams, Pjotr Prins, Zachary Sloan, Arthur Centeno. Design and code by Pjotr Prins, Zach Sloan, Arthur Centeno, Danny Arends, Christian Fischer, Sam Ockman, Lei Yan, Xiaodong Zhou, Christian Fernandez, Ning Liu, Rudi Alberts, Elissa Chesler, Sujoy Roy, Evan G. Williams, Alexander G. Williams, Kenneth Manly, Jintao Wang, and Robert W. Williams, colleagues. Python Powered Registered with Nif
GeneNetwork support from:
  • The UT Center for Integrative and Translational Genomics
  • NIGMS Systems Genetics and Precision Medicine project (R01 GM123489, 2017-2021)
  • NIDA NIDA Core Center of Excellence in Transcriptomics, Systems Genetics, and the Addictome (P30 DA044223, 2017-2022)
  • NIA Translational Systems Genetics of Mitochondria, Metabolism, and Aging (R01AG043930, 2013-2018)
  • NIAAA Integrative Neuroscience Initiative on Alcoholism (U01 AA016662, U01 AA013499, U24 AA013513, U01 AA014425, 2006-2017)
  • NIDA, NIMH, and NIAAA (P20-DA 21131, 2001-2012)
  • NCI MMHCC (U01CA105417), NCRR, BIRN, (U24 RR021760)
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