WebQTL
 
   |    Home    |    Search    |    Help    |    News    |    References    |    Policies    |    Links    |    Welcome! Login   

Probe Information

The table below lists information of all probes of probe set 1369001_at from database MDC/CAS/ICL Peritoneal Fat 230A Probe (Jun05).

QTL Heat Map and ClusteringCorrelation Matrix and PCA

Probe1
sortup.gifsortdown.gif
Sequence2
sortup.gifsortdown.gif
bl2seq3Exons4Tm °C5
sortup.gifsortdown.gif
Stacking Energy KBT6Mean7
sortup.gifsortdown.gif
Stdev8
sortup.gifsortdown.gif
Probe h29
sortup.gifsortdown.gif
Probe Location10SNPs
(Across all strains)11		SNPs
(Different alleles only between BN-Lx/Cub and SHR/OlaIpcv)11
GSB
sortup.gifsortdown.gif
NSB
sortup.gifsortdown.gif
ChrStartEnd
1 166Y25ATCTCAAATTTCAGTGCCAACCTCA 6.410.10
2 235Y33ATCTCAAATTTCAGTGCCAACCTCA
3 166Y26ATCTCAAATTTCTGTGCCAACCTCA6.800.14
4 235Y34ATCTCAAATTTCTGTGCCAACCTCA
5 696Y93AGTTCTGAGTCTGTCAACGCTGTGT
6 574Y71AGTTCTGAGTCTGTCAACGCTGTGT 6.450.11
7 696Y94AGTTCTGAGTCTCTCAACGCTGTGT
8 574Y72AGTTCTGAGTCTCTCAACGCTGTGT6.820.13
9 473363GTTGCCATGGTGATTGATCGCATCT 6.040.10
10 767499GTTGCCATGGTGATTGATCGCATCT
11 473364GTTGCCATGGTGTTTGATCGCATCT6.510.15
12 767500GTTGCCATGGTGTTTGATCGCATCT
13 660667TGATCGCATCTTTCTCTGGGTTTTC
14 361487TGATCGCATCTTTCTCTGGGTTTTC 6.740.10
15 660668TGATCGCATCTTACTCTGGGTTTTC
16 361488TGATCGCATCTTACTCTGGGTTTTC6.480.12
17 X41435GGTTTTCATCCTGGTGTGCATTTTA 7.630.17
18 775597GGTTTTCATCCTGGTGTGCATTTTA
19 X41436GGTTTTCATCCTCGTGTGCATTTTA7.700.25
20 775598GGTTTTCATCCTCGTGTGCATTTTA
21 394293GAACGGCGGGATTATTTCTGCAACC 6.260.13
22 596405GAACGGCGGGATTATTTCTGCAACC
23 394294GAACGGCGGGATAATTTCTGCAACC6.280.14
24 596406GAACGGCGGGATAATTTCTGCAACC
25 144691TGCAACCCTTGATGGCCAGAGATGA
26 X89503TGCAACCCTTGATGGCCAGAGATGA 6.070.12
27 144692TGCAACCCTTGAAGGCCAGAGATGA
28 X89504TGCAACCCTTGAAGGCCAGAGATGA5.940.09
29 347Y17ATAGACTGTGCACTGTTCATCGAGG 6.220.11
30 584Y21ATAGACTGTGCACTGTTCATCGAGG
31 347Y18ATAGACTGTGCAGTGTTCATCGAGG6.400.13
32 584Y22ATAGACTGTGCAGTGTTCATCGAGG
33 X18569GGGCCACTTCCTCAATAGCACTATA
34 509413GGGCCACTTCCTCAATAGCACTATA 10.190.19
35 X18570GGGCCACTTCCTGAATAGCACTATA
36 509414GGGCCACTTCCTGAATAGCACTATA9.600.26
37 318161ACTTTATCTGATCACTGGCTTGGAG
38 412121ACTTTATCTGATCACTGGCTTGGAG 6.230.10
39 318162ACTTTATCTGATGACTGGCTTGGAG
40 412122ACTTTATCTGATGACTGGCTTGGAG6.150.09
41 577181AATGAACATTTCACTACCCCTGTGA 8.200.13
42 777245AATGAACATTTCACTACCCCTGTGA
43 577182AATGAACATTTCTCTACCCCTGTGA8.920.14
44 777246AATGAACATTTCTCTACCCCTGTGA
CITG Web services initiated January, 1994 as Portable Dictionary of the Mouse Genome; June 15, 2001 as WebQTL; and Jan 5, 2005 as GeneNetwork. This site is currently operated by Rob Williams, Pjotr Prins, Zachary Sloan, Arthur Centeno. Design and code by Pjotr Prins, Zach Sloan, Arthur Centeno, Danny Arends, Christian Fischer, Sam Ockman, Lei Yan, Xiaodong Zhou, Christian Fernandez, Ning Liu, Rudi Alberts, Elissa Chesler, Sujoy Roy, Evan G. Williams, Alexander G. Williams, Kenneth Manly, Jintao Wang, and Robert W. Williams, colleagues. Python Powered Registered with Nif
GeneNetwork support from:
  • The UT Center for Integrative and Translational Genomics
  • NIGMS Systems Genetics and Precision Medicine project (R01 GM123489, 2017-2021)
  • NIDA NIDA Core Center of Excellence in Transcriptomics, Systems Genetics, and the Addictome (P30 DA044223, 2017-2022)
  • NIA Translational Systems Genetics of Mitochondria, Metabolism, and Aging (R01AG043930, 2013-2018)
  • NIAAA Integrative Neuroscience Initiative on Alcoholism (U01 AA016662, U01 AA013499, U24 AA013513, U01 AA014425, 2006-2017)
  • NIDA, NIMH, and NIAAA (P20-DA 21131, 2001-2012)
  • NCI MMHCC (U01CA105417), NCRR, BIRN, (U24 RR021760)
    It took 3.156 second(s) for tux01.uthsc.edu to generate this page