Details and Links

Gene Symbol:		CHRNA3
Aliases:		MGC104879
Description:		cholinergic receptor, nicotinic, alpha 3 (CHRNA3), mRNA.
Location:		Chr 15 @ 76.675146 Mb on the minus strand
Target Score:
Species and Group:		Human, Brain-Normal-NIH-Gibbs
Database 3:		GSE15745 NIH Human Brain Prefrontal Cortex ILM humanRef-8 v2.0 (May10) RankInv
Resource Links:		Gene  OMIM  HomoloGene  UniProt
		BioGPS  STRING  PANTHER  Gemma  ABA  EBI GWAS  Wiki-Pi

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  Basic Statistics

Include: All Cases Brain-Normal-NIH-Gibbs Only Non-Brain-Normal-NIH-Gibbs Only    

Basic Table Probability Plot Bar Graph (by name) Bar Graph (by rank) Box Plot Statistic Value N of Samples 146 Mean 6.662 Median 6.655 Standard Error (SE) 0.006 Standard Deviation (SD) 0.077 Minimum 6.488 Maximum 6.878 Range (log2) 0.390 Range (fold) 1.310 Interquartile Range 1.078 This plot evaluates whether data are normally distributed. Different symbols represent different groups. More about Normal Probability Plots and more about interpreting these plots from the glossary More about Box Plots Basic Table Probability Plot Bar Graph (by name) Bar Graph (by rank) Box Plot Statistic Value N of Samples 145 Mean 6.662 Median 6.654 Standard Error (SE) 0.006 Standard Deviation (SD) 0.078 Minimum 6.488 Maximum 6.878 Range (log2) 0.390 Range (fold) 1.310 Interquartile Range 1.079 This plot evaluates whether data are normally distributed. Different symbols represent different groups. More about Normal Probability Plots and more about interpreting these plots from the glossary More about Box Plots Fewer than 4 non-Brain-Normal-NIH-Gibbs case data were entered. No statistical analysis has been attempted.

  Calculate Correlations

Sample r Literature r Tissue r Database: GSE15745 NIH Human Brain Cerebellum ILM humanRef-8 v2.0 (May10) RankInv GSE15745 NIH Human Brain Pons ILM humanRef-8 v2.0 (May10) RankInv GSE15745 NIH Human Brain Prefrontal Cortex ILM humanRef-8 v2.0 (May10) RankInv GSE15745 NIH Human Brain Temporal Cerebral ILM humanRef-8 v2.0 (May10) RankInv Return: top 25 top 50 top 100 top 200 top 500 top 1000 top 2000 top 5000 top 10000 top 15000 top 20000 top 30000 top 40000 top 60000 Samples: Brain-Normal-NIH-Gibbs Only Non-Brain-Normal-NIH-Gibbs Only All Cases Pearson    Spearman Rank The Sample Correlation is computed between trait data and any other traits in the sample database selected above. Use Spearman Rank when the sample size is small (<20) or when there are influential outliers. Database: GSE15745 NIH Human Brain Cerebellum ILM humanRef-8 v2.0 (May10) RankInv GSE15745 NIH Human Brain Pons ILM humanRef-8 v2.0 (May10) RankInv GSE15745 NIH Human Brain Prefrontal Cortex ILM humanRef-8 v2.0 (May10) RankInv GSE15745 NIH Human Brain Temporal Cerebral ILM humanRef-8 v2.0 (May10) RankInv Return: top 25 top 50 top 100 top 200 top 500 top 1000 top 2000 top 5000 top 10000 top 15000 top 20000 top 30000 top 40000 top 60000 Samples: Brain-Normal-NIH-Gibbs Only Non-Brain-Normal-NIH-Gibbs Only All Cases The Literature Correlation (Lit r) between this gene and all other genes is computed using the Semantic Gene Organizer and human, rat, and mouse data from PubMed. Values are ranked by Lit r, but Sample r and Tissue r are also displayed. More on using Lit r Database: GSE15745 NIH Human Brain Cerebellum ILM humanRef-8 v2.0 (May10) RankInv GSE15745 NIH Human Brain Pons ILM humanRef-8 v2.0 (May10) RankInv GSE15745 NIH Human Brain Prefrontal Cortex ILM humanRef-8 v2.0 (May10) RankInv GSE15745 NIH Human Brain Temporal Cerebral ILM humanRef-8 v2.0 (May10) RankInv Return: top 25 top 50 top 100 top 200 top 500 top 1000 top 2000 top 5000 top 10000 top 15000 top 20000 top 30000 top 40000 top 60000 Samples: Brain-Normal-NIH-Gibbs Only Non-Brain-Normal-NIH-Gibbs Only All Cases Pearson    Spearman Rank The Tissue Correlation (Tissue r) estimates the similarity of expression of two genes or transcripts across different cells, tissues, or organs (glossary). Tissue correlations are generated by analyzing expression in multiple samples usually taken from single cases. Pearson and Spearman Rank correlations have been computed for all pairs of genes using data from mouse samples.

  Mapping Tools

Mapping options are disabled for data not matched with genotypes.

  Review and Edit Data

Edit or delete values in the Trait Data boxes, and use the Reset option as needed.   Block samples by index:         Brain-Normal-NIH-Gibbs Only Non-Brain-Normal-NIH-Gibbs Only       Options:                          Outliers highlighted in  yellow  can be hidden using the Hide Outliers button,   and samples with no value (x) can be hidden by clicking Hide No Value . Index Sample Value 1 BLSA0745 2 BLSA0827 3 BLSA1556 4 BLSA1579 5 BLSA1595 6 BLSA1603 7 BLSA1640 8 BLSA1775 9 BLSA1802 10 BLSA1805 11 BLSA1838 12 BLSA1839 13 BLSA1840 14 BLSA1883 15 BLSA1889 16 BLSA1924 17 BLSA1961 18 BLSA2000 19 BLSA2020 20 BLSA2037 21 BLSA2066 22 BLSA2069 23 BLSA2093 24 BLSA2102 25 JHU0384 26 JHU0705 27 JHU0710 28 JHU0712 29 JHU0713 30 JHU0719 31 JHU0993 32 JHU0994 33 JHU0995 34 UMARY0142 35 UMARY0602 36 UMARY0604 37 UMARY0813 38 UMARY0819 39 UMARY0871 40 UMARY0879 41 UMARY0880 42 UMARY0914 43 UMARY0927 44 UMARY0933 45 UMARY1028 46 UMARY1037 47 UMARY1064 48 UMARY1065 49 UMARY1076 50 UMARY1078 51 UMARY1079 52 UMARY1104 53 UMARY1105 54 UMARY1114 55 UMARY1133 56 UMARY1134 57 UMARY1136 58 UMARY1158 59 UMARY1170 60 UMARY1206 61 UMARY1209 62 UMARY1226 63 UMARY1230 64 UMARY1260 65 UMARY1326 66 UMARY1454 67 UMARY1465 68 UMARY1486 69 UMARY1496 70 UMARY1498 71 UMARY1502 72 UMARY1535 73 UMARY1540 74 UMARY1541 75 UMARY1544 76 UMARY1545 77 UMARY1568 78 UMARY1570 79 UMARY1571 80 UMARY1578 81 UMARY1583 82 UMARY1584 83 UMARY1611 84 UMARY1612 85 UMARY1613 86 UMARY1614 87 UMARY1648 88 UMARY1652 89 UMARY1668 90 UMARY1710 91 UMARY1712 92 UMARY1713 93 UMARY1715 94 UMARY1792 95 UMARY1795 96 UMARY1797 97 UMARY1825 98 UMARY1827 99 UMARY1830 100 UMARY1846 101 UMARY1847 102 UMARY1849 103 UMARY1862 104 UMARY1865 105 UMARY1866 106 UMARY1867 107 UMARY1902 108 UMARY1903 109 UMARY1907 110 UMARY1909 111 UMARY1917 112 UMARY1935 113 UMARY1936 114 UMARY1939 115 UMARY1940 116 UMARY4263 117 UMARY4540 118 UMARY4542 119 UMARY4543 120 UMARY4545 121 UMARY4549 122 UMARY4590 123 UMARY4593 124 UMARY4598 125 UMARY4636 126 UMARY4640 127 UMARY4725 128 UMARY4726 129 UMARY4727 130 UMARY4729 131 UMARY4782 132 UMARY4786 133 UMARY4788 134 UMARY4789 135 UMARY4841 136 UMARY4842 137 UMARY4903 138 UMARY4915 139 UMARY4916 140 UMARY4924 141 UMARY5024 142 UMARY5028 143 UMARY5078 144 UMARY5079 145 UMARY5081 146 UMARY5086 147 UMARY5087   Index Sample Value 1 UMARY5087