GSE5281 Human Brain Full Liang (Jul09) RMA : 211772_x_at: Display Trait

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Trait Data and Analysis for Record ID 211772_x_at

Details and Links

Gene Symbol: CHRNA3
Aliases: CHRNA3
Description: cholinergic receptor, nicotinic, alpha 3
Location: Chr 15 @ 76.672451 Mb on the minus strand
Target Score:
Species and Group: Human, AD-cases-controls
Database 3: GSE5281 Human Brain Full Liang (Jul09) RMA
Resource Links: Gene OMIM UniGene GenBank HomoloGene
BioGPS STRING PANTHER Gemma ABA EBI GWAS Wiki-Pi

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Basic Statistics

Include:

Basic Table
Probability Plot
Bar Graph (by name)
Bar Graph (by rank)
Box Plot

Statistic Value
N of Samples 157
Mean 6.424
Median 6.368
Standard Error (SE) 0.023
Standard Deviation (SD) 0.288
Minimum 5.778
Maximum 7.400
Range (log2) 1.622
Range (fold) 3.078
Interquartile Range 1.250

This plot evaluates whether data are normally distributed. Different symbols represent different groups.

More about Normal Probability Plots and more about interpreting these plots from the glossary

More about Box Plots

Basic Table
Probability Plot
Bar Graph (by name)
Bar Graph (by rank)
Box Plot

Statistic Value
N of Samples 156
Mean 6.426
Median 6.371
Standard Error (SE) 0.023
Standard Deviation (SD) 0.288
Minimum 5.778
Maximum 7.400
Range (log2) 1.622
Range (fold) 3.078
Interquartile Range 1.250

This plot evaluates whether data are normally distributed. Different symbols represent different groups.

More about Normal Probability Plots and more about interpreting these plots from the glossary

More about Box Plots
Fewer than 4 non-AD-cases-controls case data were entered. No statistical analysis has been attempted.

Calculate Correlations

Sample r
Literature r
Tissue r

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Samples:

Pearson Spearman Rank

The Sample Correlation is computed between trait data and any
other traits in the sample database selected above. Use Spearman Rank
when the sample size is small (<20) or when there are influential outliers.
Database:
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Samples:

The Literature Correlation (Lit r) between this gene and all other genes is computed
using the Semantic Gene Organizer and human, rat, and mouse data from PubMed.
Values are ranked by Lit r, but Sample r and Tissue r are also displayed.

More on using Lit r
Database:
Return:
Samples:

Pearson Spearman Rank

The Tissue Correlation (Tissue r) estimates the similarity of expression of two genes
or transcripts across different cells, tissues, or organs (glossary). Tissue correlations
are generated by analyzing expression in multiple samples usually taken from single cases.
Pearson and Spearman Rank correlations have been computed for all pairs of genes
using data from mouse samples.

Mapping Tools

Mapping options are disabled for data not matched with genotypes.

Review and Edit Data

Edit or delete values in the Trait Data boxes, and use the Reset option as needed.
  Block samples by index:
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  Options:

  Outliers highlighted in yellow can be hidden using the Hide Outliers button,
  and samples with no value (x) can be hidden by clicking Hide No Value .

Index Sample Value Status Tissue Sex Age
1 E119615M63N Normal Entorhinal Cortex Male 63
2 E119616M85N Normal Entorhinal Cortex Male 85
3 E119617M80N Normal Entorhinal Cortex Male 80
4 E119618M80N Normal Entorhinal Cortex Female 80
5 E119619F102N Normal Entorhinal Cortex Male 102
6 E119620M79N Normal Entorhinal Cortex Male 79
7 E119621M76N Normal Entorhinal Cortex Male 76
8 E119622M83N Normal Entorhinal Cortex Male 83
9 E119623M79N Normal Entorhinal Cortex Male 79
10 E119624F88N Normal Entorhinal Cortex Female 88
11 E119625F82N Normal Entorhinal Cortex Female 82
12 E119626M69N Normal Entorhinal Cortex Male 69
13 E119627M78N Normal Entorhinal Cortex Male 78
14 E238763F82A Alzheimer's Entorhinal Cortex Female 82
15 E238790F86A Alzheimer's Entorhinal Cortex Female 86
16 E238791F93A Alzheimer's Entorhinal Cortex Female 93
17 E238792M84A Alzheimer's Entorhinal Cortex Male 84
18 E238793F79A Alzheimer's Entorhinal Cortex Female 79
19 E238794F78A Alzheimer's Entorhinal Cortex Female 78
20 E238795F91A Alzheimer's Entorhinal Cortex Female 91
21 E238796M86A Alzheimer's Entorhinal Cortex Male 86
22 E238798M80A Alzheimer's Entorhinal Cortex Male 80
23 H119628M85N Normal Hippocampus Male 85
24 H119629M80N Normal Hippocampus Male 80
25 H119630M80N Normal Hippocampus Male 80
26 H119631F102N Normal Hippocampus Female 102
27 H119632M63N Normal Hippocampus Male 63
28 H119633M79N Normal Hippocampus Male 79
29 H119634M76N Normal Hippocampus Male 76
30 H119635M83N Normal Hippocampus Male 83
31 H119636M79N Normal Hippocampus Male 79
32 H119637F88N Normal Hippocampus Female 88
33 H119638F73N Normal Hippocampus Female 73
34 H119639M69N Normal Hippocampus Male 69
35 H119640M78N Normal Hippocampus Male 78
36 H238799F73A Alzheimer's Hippocampus Female 73
37 H238800M81A Alzheimer's Hippocampus Male 81
38 H238801M78A Alzheimer's Hippocampus Male 78
39 H238802M75A Alzheimer's Hippocampus Male 75
40 H238803F70A Alzheimer's Hippocampus Female 70
41 H238804F85A Alzheimer's Hippocampus Female 85
42 H238805F77A Alzheimer's Hippocampus Female 77
43 H238806M79A Alzheimer's Hippocampus Male 79
44 H238807M88A Alzheimer's Hippocampus Male 88
45 H238808M72A Alzheimer's Hippocampus Male 72
46 MT119641M85N Normal Medial Temporal Gyrus Male 85
47 MT119642M80N Normal Medial Temporal Gyrus Male 80
48 MT119643F102N Normal Medial Temporal Gyrus Female 102
49 MT119644M63N Normal Medial Temporal Gyrus Male 63
50 MT119645M79N Normal Medial Temporal Gyrus Male 79
51 MT119646M83N Normal Medial Temporal Gyrus Male 83
52 MT119647M79N Normal Medial Temporal Gyrus Male 79
53 MT119648F88N Normal Medial Temporal Gyrus Female 88
54 MT119649F82N Normal Medial Temporal Gyrus Female 82
55 MT119650F73N Normal Medial Temporal Gyrus Female 73
56 MT119651M69N Normal Medial Temporal Gyrus Male 69
57 MT119652M78N Normal Medial Temporal Gyrus Female 78
58 MT238809M81A Alzheimer's Medial Temporal Gyrus Male 81
59 MT238810M72A Alzheimer's Medial Temporal Gyrus Male 72
60 MT238811M75A Alzheimer's Medial Temporal Gyrus Male 75
61 MT238812M78A Alzheimer's Medial Temporal Gyrus Male 78
62 MT238813M75A Alzheimer's Medial Temporal Gyrus Male 75
63 MT238815F95A Alzheimer's Medial Temporal Gyrus Female 95
64 MT238816F81A Alzheimer's Medial Temporal Gyrus Female 81
65 MT238817F85A Alzheimer's Medial Temporal Gyrus Female 85
66 MT238818M79A Alzheimer's Medial Temporal Gyrus Male 79
67 MT238819F82A Alzheimer's Medial Temporal Gyrus Female 82
68 MT238820M88A Alzheimer's Medial Temporal Gyrus Male 88
69 MT238821M72A Alzheimer's Medial Temporal Gyrus Male 72
70 MT238822F73A Alzheimer's Medial Temporal Gyrus Female 73
71 MT238823M87A Alzheimer's Medial Temporal Gyrus Male 87
72 MT238824M68A Alzheimer's Medial Temporal Gyrus Male 68
73 MT238825F80A Alzheimer's Medial Temporal Gyrus Female 80
74 PC119653M85N Normal Posterior Cingulate Male 85
75 PC119654M80N Normal Posterior Cingulate Male 80
76 PC119655F102N Normal Posterior Cingulate Female 102
77 PC119656M63N Normal Posterior Cingulate Male 63
78 PC119657M79N Normal Posterior Cingulate Male 79
79 PC119658M76N Normal Posterior Cingulate Female 76
80 PC119659M83N Normal Posterior Cingulate Male 83
81 PC119660M79N Normal Posterior Cingulate Male 79
82 PC119662F82N Normal Posterior Cingulate Female 82
83 PC119663F73N Normal Posterior Cingulate Female 73
84 PC119664M69N Normal Posterior Cingulate Male 69
85 PC119665M78N Normal Posterior Cingulate Male 78
86 PC238826F73A Alzheimer's Posterior Cingulate Female 73
87 PC238827M81A Alzheimer's Posterior Cingulate Male 81
88 PC238834M78A Alzheimer's Posterior Cingulate Male 78
89 PC238835M75A Alzheimer's Posterior Cingulate Male 75
90 PC238837M68A Alzheimer's Posterior Cingulate Male 68
91 PC238838F70A Alzheimer's Posterior Cingulate Female 70
92 PC238839F85A Alzheimer's Posterior Cingulate Female 85
93 PC238840M79A Alzheimer's Posterior Cingulate Male 79
94 PC238841M88A Alzheimer's Posterior Cingulate Male 88
95 SF119667F88N Normal Superior Frontal Gyrus Male 88
96 SF119668F82N Normal Superior Frontal Gyrus Male 82
97 SF119669F73N Normal Superior Frontal Gyrus Male 73
98 SF119670F102N Normal Superior Frontal Gyrus Male 102
99 SF119671M63N Normal Superior Frontal Gyrus Male 63
100 SF119672M79N Normal Superior Frontal Gyrus Female 79
101 SF119673M76N Normal Superior Frontal Gyrus Female 76
102 SF119674M83N Normal Superior Frontal Gyrus Female 83
103 SF119675M69N Normal Superior Frontal Gyrus Male 69
104 SF238842F73A Alzheimer's Superior Frontal Gyrus Female 73
105 SF238843M81A Alzheimer's Superior Frontal Gyrus Male 81
106 SF238844M72A Alzheimer's Superior Frontal Gyrus Male 72
107 SF238845M75A Alzheimer's Superior Frontal Gyrus Male 75
108 SF238846M78A Alzheimer's Superior Frontal Gyrus Male 78
109 SF238847M75A Alzheimer's Superior Frontal Gyrus Male 75
110 SF238848M87A Alzheimer's Superior Frontal Gyrus Male 87
111 SF238851F95A Alzheimer's Superior Frontal Gyrus Female 95
112 SF238854M68A Alzheimer's Superior Frontal Gyrus Male 68
113 SF238855F95A Alzheimer's Superior Frontal Gyrus Female 95
114 SF238856F70A Alzheimer's Superior Frontal Gyrus Female 70
115 SF238857F85A Alzheimer's Superior Frontal Gyrus Female 85
116 SF238858F83A Alzheimer's Superior Frontal Gyrus Female 83
117 SF238860F77A Alzheimer's Superior Frontal Gyrus Female 77
118 SF238861F83A Alzheimer's Superior Frontal Gyrus Female 83
119 SF238862M68A Alzheimer's Superior Frontal Gyrus Male 68
120 SF238863M79A Alzheimer's Superior Frontal Gyrus Male 79
121 SF238864F82A Alzheimer's Superior Frontal Gyrus Female 82
122 SF238865M88A Alzheimer's Superior Frontal Gyrus Male 88
123 SF238867F80A Alzheimer's Superior Frontal Gyrus Female 80
124 SF238868M74A Alzheimer's Superior Frontal Gyrus Male 74
125 SF238870M72A Alzheimer's Superior Frontal Gyrus Male 72
126 SF238871M80A Alzheimer's Superior Frontal Gyrus Male 80
127 V119677M85N Normal Primary Visual Cortex Male 85
128 V119678M80N Normal Primary Visual Cortex Male 80
129 V119679M63N Normal Primary Visual Cortex Male 63
130 V119680M79N Normal Primary Visual Cortex Male 79
131 V119681M76N Normal Primary Visual Cortex Male 76
132 V119682M83N Normal Primary Visual Cortex Male 83
133 V119683M79N Normal Primary Visual Cortex Male 79
134 V119684F88N Normal Primary Visual Cortex Female 88
135 V119685F82N Normal Primary Visual Cortex Female 82
136 V119686F73N Normal Primary Visual Cortex Female 73
137 V119687M69N Normal Primary Visual Cortex Male 69
138 V119688M78N Normal Primary Visual Cortex Male 78
139 V238872F73A Alzheimer's Primary Visual Cortex Female 73
140 V238873M81A Alzheimer's Primary Visual Cortex Male 81
141 V238874M75A Alzheimer's Primary Visual Cortex Male 75
142 V238875M78A Alzheimer's Primary Visual Cortex Male 78
143 V238877M75A Alzheimer's Primary Visual Cortex Male 75
144 V238941M87A Alzheimer's Primary Visual Cortex Male 87
145 V238942F95A Alzheimer's Primary Visual Cortex Female 95
146 V238943M68A Alzheimer's Primary Visual Cortex Male 68
147 V238944F70A Alzheimer's Primary Visual Cortex Female 70
148 V238945F81A Alzheimer's Primary Visual Cortex Female 81
149 V238946F85A Alzheimer's Primary Visual Cortex Female 85
150 V238947M68A Alzheimer's Primary Visual Cortex Male 68
151 V238948M79A Alzheimer's Primary Visual Cortex Male 79
152 V238949F82A Alzheimer's Primary Visual Cortex Female 82
153 V238951M88A Alzheimer's Primary Visual Cortex Male 88
154 V238952M74A Alzheimer's Primary Visual Cortex Male 74
155 V238953M72A Alzheimer's Primary Visual Cortex Male 72
156 V238955M68A Alzheimer's Primary Visual Cortex Female 68

Index Sample Value Status Tissue Sex Age
1 V238963F80A Alzheimer's Primary Visual Cortex Female 80

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