WebQTL
 
   |    Home    |    Search    |    Help    |    News    |    References    |    Policies    |    Links    |    Welcome! Login   

Trait Data and Analysis  for Record ID ENSG00000080644

  Details and Links

Gene Symbol: CHRNA3
Aliases: LNCR2; NACHRA3; PAOD2
Description: cholinergic receptor, 2C nicotinic, 2C alpha 3 (neuronal)
Location: Chr 15 @ 78.593052 Mb on the minus strand
Target Score:
Species and Group: Human, GTEx_v5
Database 3: GTEXv5 Human Fallopian Tube RefSeq (Sep15) RPKM log2
Resource Links: Gene  OMIM  UniGene  HomoloGene  
BioGPS  STRING  PANTHER  Gemma  ABA  EBI GWAS  Wiki-Pi  

Add To Collection Find similar expression data  Check probe locations at UCSC  Write or review comments about this gene
AddFindVerifyGeneWiki

  Basic Statistics



StatisticValue
N of Samples7
Mean0.040
Median0.045
Standard Error (SE)0.011
Standard Deviation (SD)0.028
Minimum0.000
Maximum0.082
Range (log2)0.082
Range (fold)1.058
Interquartile Range1.025

nP_eKGydRAE.gif


This plot evaluates whether data are normally distributed. Different symbols represent different groups.

More about Normal Probability Plots and more about interpreting these plots from the glossary

Box_CfZloqQI.gif

More about Box Plots

Bar_5dx4jQxG.gif

Bar_w8rQ15uE.gif

  Calculate Correlations

Database:
Return:

Pearson    Spearman Rank



The Sample Correlation is computed between trait data and any
other traits in the sample database selected above. Use Spearman Rank
when the sample size is small (<20) or when there are influential outliers.
Database:
Return:



The Literature Correlation (Lit r) between this gene and all other genes is computed
using the Semantic Gene Organizer and human, rat, and mouse data from PubMed.
Values are ranked by Lit r, but Sample r and Tissue r are also displayed.

More on using Lit r
Database:
Return:

Pearson    Spearman Rank



The Tissue Correlation (Tissue r) estimates the similarity of expression of two genes
or transcripts across different cells, tissues, or organs (glossary). Tissue correlations
are generated by analyzing expression in multiple samples usually taken from single cases.
Pearson and Spearman Rank correlations have been computed for all pairs of genes
using data from mouse samples.

  Mapping Tools

mappingMethodId 2 has not been implemented for this dataset yet.

  Review and Edit Data

Edit or delete values in the Trait Data boxes, and use the Reset option as needed.

  Block samples by index:        
  Options:                       


  Outliers highlighted in  yellow  can be hidden using the Hide Outliers button,
  and samples with no value (x) can be hidden by clicking Hide No Value .


IndexSampleValue
1 GTEXv5-1117F
2 GTEXv5-111CU
3 GTEXv5-111FC
4 GTEXv5-111VG
5 GTEXv5-111YS
6 GTEXv5-1122O
7 GTEXv5-1128S
8 GTEXv5-113IC
9 GTEXv5-113JC
10 GTEXv5-117XS
11 GTEXv5-117YW
12 GTEXv5-117YX
13 GTEXv5-1192W
14 GTEXv5-1192X
15 GTEXv5-11DXW
16 GTEXv5-11DXX
17 GTEXv5-11DXY
18 GTEXv5-11DXZ
19 GTEXv5-11DYG
20 GTEXv5-11DZ1
21 GTEXv5-11EI6
22 GTEXv5-11EM3
23 GTEXv5-11EMC
24 GTEXv5-11EQ8
25 GTEXv5-11EQ9
26 GTEXv5-11GS4
27 GTEXv5-11GSO
28 GTEXv5-11GSP
29 GTEXv5-11H98
30 GTEXv5-11I78
31 GTEXv5-11ILO
32 GTEXv5-11LCK
33 GTEXv5-11NSD
34 GTEXv5-11NUK
35 GTEXv5-11NV4
36 GTEXv5-11O72
37 GTEXv5-11OC5
38 GTEXv5-11OF3
39 GTEXv5-11ONC
40 GTEXv5-11P7K
41 GTEXv5-11P81
42 GTEXv5-11P82
43 GTEXv5-11PRG
44 GTEXv5-11TT1
45 GTEXv5-11TTK
46 GTEXv5-11TUW
47 GTEXv5-11UD1
48 GTEXv5-11UD2
49 GTEXv5-11VI4
50 GTEXv5-11WQC
51 GTEXv5-11WQK
52 GTEXv5-11XUK
53 GTEXv5-11ZTS
54 GTEXv5-11ZTT
55 GTEXv5-11ZU8
56 GTEXv5-11ZUS
57 GTEXv5-11ZVC
58 GTEXv5-1211K
59 GTEXv5-12126
60 GTEXv5-1212Z
61 GTEXv5-12584
62 GTEXv5-12696
63 GTEXv5-1269C
64 GTEXv5-12BJ1
65 GTEXv5-12C56
66 GTEXv5-12KS4
67 GTEXv5-12WS9
68 GTEXv5-12WSA
69 GTEXv5-12WSB
70 GTEXv5-12WSC
71 GTEXv5-12WSD
72 GTEXv5-12WSE
73 GTEXv5-12WSF
74 GTEXv5-12WSG
75 GTEXv5-12WSH
76 GTEXv5-12WSI
77 GTEXv5-12WSJ
78 GTEXv5-12WSK
79 GTEXv5-12WSL
80 GTEXv5-12WSM
81 GTEXv5-12WSN
82 GTEXv5-12ZZW
83 GTEXv5-12ZZX
84 GTEXv5-12ZZY
85 GTEXv5-12ZZZ
86 GTEXv5-13111
87 GTEXv5-13112
88 GTEXv5-13113
89 GTEXv5-1313W
90 GTEXv5-1314G
91 GTEXv5-131XE
92 GTEXv5-131XF
93 GTEXv5-131XG
94 GTEXv5-131XH
95 GTEXv5-131XW
96 GTEXv5-131YS
97 GTEXv5-132AR
98 GTEXv5-132NY
99 GTEXv5-132Q8
100 GTEXv5-132QS
101 GTEXv5-1339X
102 GTEXv5-133LE
103 GTEXv5-1399Q
104 GTEXv5-1399R
105 GTEXv5-1399S
106 GTEXv5-1399T
107 GTEXv5-1399U
108 GTEXv5-139D8
109 GTEXv5-139T4
110 GTEXv5-139T6
111 GTEXv5-139T8
112 GTEXv5-139TS
113 GTEXv5-139TT
114 GTEXv5-139TU
115 GTEXv5-139UC
116 GTEXv5-139UW
117 GTEXv5-139YR
118 GTEXv5-13CF2
119 GTEXv5-13CF3
120 GTEXv5-13CIG
121 GTEXv5-13CZU
122 GTEXv5-13CZV
123 GTEXv5-13D11
124 GTEXv5-13FH7
125 GTEXv5-13FHO
126 GTEXv5-13FHP
127 GTEXv5-13FLV
128 GTEXv5-13FLW
129 GTEXv5-13FTW
130 GTEXv5-13FTX
131 GTEXv5-13FTY
132 GTEXv5-13FTZ
133 GTEXv5-13FXS
134 GTEXv5-13G51
135 GTEXv5-13IVO
136 GTEXv5-13JUV
137 GTEXv5-13JVG
138 GTEXv5-13N11
139 GTEXv5-13N1W
140 GTEXv5-13N2G
141 GTEXv5-13NYB
142 GTEXv5-13NYC
143 GTEXv5-13NYS
144 GTEXv5-13NZ8
145 GTEXv5-13NZ9
146 GTEXv5-13NZA
147 GTEXv5-13NZB
148 GTEXv5-13O1R
149 GTEXv5-13O21
150 GTEXv5-13O3O
151 GTEXv5-13O3P
152 GTEXv5-13O3Q
153 GTEXv5-13O61
154 GTEXv5-13OVG
155 GTEXv5-13OVH
156 GTEXv5-13OVI
157 GTEXv5-13OVJ
158 GTEXv5-13OVK
159 GTEXv5-13OVL
160 GTEXv5-13OW5
161 GTEXv5-13OW6
162 GTEXv5-13OW7
163 GTEXv5-13OW8
164 GTEXv5-13PDP
165 GTEXv5-13PL6
166 GTEXv5-13PL7
167 GTEXv5-13PLJ
168 GTEXv5-13PVQ
169 GTEXv5-13PVR
170 GTEXv5-13QBU
171 GTEXv5-13QIC
172 GTEXv5-13QJ3
173 GTEXv5-13QJC
174 GTEXv5-13RTJ
175 GTEXv5-13RTK
176 GTEXv5-13RTL
177 GTEXv5-13S7M
178 GTEXv5-13S86
179 GTEXv5-13SLW
180 GTEXv5-13SLX
181 GTEXv5-13U4I
182 GTEXv5-13VXT
183 GTEXv5-13VXU
184 GTEXv5-13W3W
185 GTEXv5-13W46
186 GTEXv5-13X6H
187 GTEXv5-13X6I
188 GTEXv5-13X6J
189 GTEXv5-13X6K
190 GTEXv5-13YAN
191 GTEXv5-1445S
192 GTEXv5-144FL
193 GTEXv5-144GL
194 GTEXv5-144GM
195 GTEXv5-144GN
196 GTEXv5-144GO
197 GTEXv5-145LS
198 GTEXv5-145LT
199 GTEXv5-145LU
200 GTEXv5-145LV
201 GTEXv5-145ME
202 GTEXv5-145MF
203 GTEXv5-145MG
204 GTEXv5-145MH
205 GTEXv5-145MI
206 GTEXv5-145MN
207 GTEXv5-145MO
208 GTEXv5-146FH
209 GTEXv5-146FQ
210 GTEXv5-146FR
211 GTEXv5-14753
212 GTEXv5-1477Z
213 GTEXv5-147F3
214 GTEXv5-147F4
215 GTEXv5-147GR
216 GTEXv5-147JS
217 GTEXv5-148VI
218 GTEXv5-148VJ
219 GTEXv5-1497J
220 GTEXv5-14A5H
221 GTEXv5-14A5I
222 GTEXv5-14A6H
223 GTEXv5-14ABY
224 GTEXv5-14AS3
225 GTEXv5-14ASI
226 GTEXv5-14B4R
227 GTEXv5-14BIL
228 GTEXv5-14BIM
229 GTEXv5-14BIN
230 GTEXv5-14BMU
231 GTEXv5-14BMV
232 GTEXv5-14C38
233 GTEXv5-14C39
234 GTEXv5-14C5O
235 GTEXv5-14DAQ
236 GTEXv5-14DAR
237 GTEXv5-14E1K
238 GTEXv5-14E6C
239 GTEXv5-14E6D
240 GTEXv5-14E6E
241 GTEXv5-14E7W
242 GTEXv5-14H4A
243 GTEXv5-14ICK
244 GTEXv5-14ICL
245 GTEXv5-N7MS
246 GTEXv5-N7MT
247 GTEXv5-NFK9
248 GTEXv5-NL3G
249 GTEXv5-NL3H
250 GTEXv5-NL4W
251 GTEXv5-NPJ7
252 GTEXv5-NPJ8
253 GTEXv5-O5YT
254 GTEXv5-O5YU
255 GTEXv5-O5YV
256 GTEXv5-O5YW
257 GTEXv5-OHPJ
258 GTEXv5-OHPK
259 GTEXv5-OHPL
260 GTEXv5-OHPM
261 GTEXv5-OHPN
262 GTEXv5-OIZF
263 GTEXv5-OIZG
264 GTEXv5-OIZH
265 GTEXv5-OIZI
266 GTEXv5-OOBJ
267 GTEXv5-OOBK
268 GTEXv5-OXRK
269 GTEXv5-OXRL
270 GTEXv5-OXRN
271 GTEXv5-OXRO
272 GTEXv5-OXRP
273 GTEXv5-P44G
274 GTEXv5-P44H
275 GTEXv5-P4PP
276 GTEXv5-P4PQ
277 GTEXv5-P4QR
278 GTEXv5-P4QS
279 GTEXv5-P4QT
280 GTEXv5-P78B
281 GTEXv5-PLZ4
282 GTEXv5-PLZ5
283 GTEXv5-PLZ6
284 GTEXv5-POMQ
285 GTEXv5-POYW
286 GTEXv5-PSDG
287 GTEXv5-PVOW
288 GTEXv5-PW2O
289 GTEXv5-PWCY
290 GTEXv5-PWN1
291 GTEXv5-PWO3
292 GTEXv5-PWOO
293 GTEXv5-PX3G
294 GTEXv5-Q2AG
295 GTEXv5-Q2AH
296 GTEXv5-Q2AI
297 GTEXv5-Q734
298 GTEXv5-QCQG
299 GTEXv5-QDT8
300 GTEXv5-QDVJ
301 GTEXv5-QDVN
302 GTEXv5-QEG4
303 GTEXv5-QEG5
304 GTEXv5-QEL4
305 GTEXv5-QESD
306 GTEXv5-QLQ7
307 GTEXv5-QLQW
308 GTEXv5-QMR6
309 GTEXv5-QMRM
310 GTEXv5-QV31
311 GTEXv5-QV44
312 GTEXv5-QVJO
313 GTEXv5-QVUS
314 GTEXv5-QXCU
315 GTEXv5-R3RS
316 GTEXv5-R45C
317 GTEXv5-R53T
318 GTEXv5-R55C
319 GTEXv5-R55D
320 GTEXv5-R55E
321 GTEXv5-R55F
322 GTEXv5-R55G
323 GTEXv5-REY6
324 GTEXv5-RM2N
325 GTEXv5-RN64
326 GTEXv5-RNOR
327 GTEXv5-RTLS
328 GTEXv5-RU1J
329 GTEXv5-RU72
330 GTEXv5-RUSQ
331 GTEXv5-RVPU
332 GTEXv5-RVPV
333 GTEXv5-RWS6
334 GTEXv5-RWSA
335 GTEXv5-S32W
336 GTEXv5-S33H
337 GTEXv5-S341
338 GTEXv5-S3XE
339 GTEXv5-S4P3
340 GTEXv5-S4Q7
341 GTEXv5-S4UY
342 GTEXv5-S4Z8
343 GTEXv5-S7PM
344 GTEXv5-S7SE
345 GTEXv5-S7SF
346 GTEXv5-S95S
347 GTEXv5-SE5C
348 GTEXv5-SIU7
349 GTEXv5-SIU8
350 GTEXv5-SJXC
351 GTEXv5-SN8G
352 GTEXv5-SNMC
353 GTEXv5-SNOS
354 GTEXv5-SSA3
355 GTEXv5-SUCS
356 GTEXv5-T2IS
357 GTEXv5-T2YK
358 GTEXv5-T5JC
359 GTEXv5-T5JW
360 GTEXv5-T6MN
361 GTEXv5-T6MO
362 GTEXv5-T8EM
363 GTEXv5-TKQ1
364 GTEXv5-TKQ2
365 GTEXv5-TMKS
366 GTEXv5-TML8
367 GTEXv5-TMMY
368 GTEXv5-TMZS
369 GTEXv5-TSE9
370 GTEXv5-U3ZG
371 GTEXv5-U3ZH
372 GTEXv5-U3ZM
373 GTEXv5-U3ZN
374 GTEXv5-U412
375 GTEXv5-U4B1
376 GTEXv5-U8T8
377 GTEXv5-U8XE
378 GTEXv5-UJHI
379 GTEXv5-UJMC
380 GTEXv5-UPIC
381 GTEXv5-UPJH
382 GTEXv5-UPK5
383 GTEXv5-UTHO
384 GTEXv5-V1D1
385 GTEXv5-V955
386 GTEXv5-VJWN
387 GTEXv5-VJYA
388 GTEXv5-VUSG
389 GTEXv5-VUSH
390 GTEXv5-W5WG
391 GTEXv5-W5X1
392 GTEXv5-WCDI
393 GTEXv5-WEY5
394 GTEXv5-WFG7
395 GTEXv5-WFG8
396 GTEXv5-WFJO
397 GTEXv5-WFON
398 GTEXv5-WH7G
399 GTEXv5-WHPG
400 GTEXv5-WHSB
401 GTEXv5-WHSE
402 GTEXv5-WHWD
403 GTEXv5-WI4N
404 GTEXv5-WK11
405 GTEXv5-WL46
406 GTEXv5-WOFL
407 GTEXv5-WOFM
408 GTEXv5-WQUQ
409 GTEXv5-WRHK
410 GTEXv5-WRHU
411 GTEXv5-WVJS
412 GTEXv5-WVLH
413 GTEXv5-WWTW
414 GTEXv5-WWYW
415 GTEXv5-WXYG
416 GTEXv5-WY7C
417 GTEXv5-WYBS
418 GTEXv5-WYJK
419 GTEXv5-WYVS
420 GTEXv5-WZTO
421 GTEXv5-X15G
422 GTEXv5-X261
423 GTEXv5-X3Y1
424 GTEXv5-X4EO
425 GTEXv5-X4EP
426 GTEXv5-X4LF
427 GTEXv5-X4XX
428 GTEXv5-X4XY
429 GTEXv5-X585
430 GTEXv5-X5EB
431 GTEXv5-X62O
432 GTEXv5-X638
433 GTEXv5-X88G
434 GTEXv5-X8HC
435 GTEXv5-XAJ8
436 GTEXv5-XBEC
437 GTEXv5-XBED
438 GTEXv5-XBEW
439 GTEXv5-XGQ4
440 GTEXv5-XK95
441 GTEXv5-XLM4
442 GTEXv5-XMD1
443 GTEXv5-XMD2
444 GTEXv5-XMD3
445 GTEXv5-XMK1
446 GTEXv5-XOT4
447 GTEXv5-XOTO
448 GTEXv5-XPT6
449 GTEXv5-XPVG
450 GTEXv5-XQ3S
451 GTEXv5-XQ8I
452 GTEXv5-XUJ4
453 GTEXv5-XUW1
454 GTEXv5-XUYS
455 GTEXv5-XUZC
456 GTEXv5-XV7Q
457 GTEXv5-XXEK
458 GTEXv5-XYKS
459 GTEXv5-Y111
460 GTEXv5-Y114
461 GTEXv5-Y3I4
462 GTEXv5-Y3IK
463 GTEXv5-Y5LM
464 GTEXv5-Y5V5
465 GTEXv5-Y5V6
466 GTEXv5-Y8DK
467 GTEXv5-Y8E4
468 GTEXv5-Y8E5
469 GTEXv5-Y8LW
470 GTEXv5-Y9LG
471 GTEXv5-YB5E
472 GTEXv5-YB5K
473 GTEXv5-YBZK
474 GTEXv5-YEC3
475 GTEXv5-YEC4
476 GTEXv5-YECK
477 GTEXv5-YF7O
478 GTEXv5-YFC4
479 GTEXv5-YFCO
480 GTEXv5-YJ89
481 GTEXv5-YJ8A
482 GTEXv5-YJ8O
483 GTEXv5-Z93S
484 GTEXv5-Z93T
485 GTEXv5-Z9EW
486 GTEXv5-ZA64
487 GTEXv5-ZAB4
488 GTEXv5-ZAB5
489 GTEXv5-ZAJG
490 GTEXv5-ZAK1
491 GTEXv5-ZAKK
492 GTEXv5-ZC5H
493 GTEXv5-ZDTS
494 GTEXv5-ZDTT
495 GTEXv5-ZDXO
496 GTEXv5-ZDYS
497 GTEXv5-ZE7O
498 GTEXv5-ZE9C
499 GTEXv5-ZEX8
500 GTEXv5-ZF28
501 GTEXv5-ZF29
502 GTEXv5-ZF2S
503 GTEXv5-ZF3C
504 GTEXv5-ZG7Y
505 GTEXv5-ZGAY
506 GTEXv5-ZLFU
507 GTEXv5-ZLV1
508 GTEXv5-ZLWG
509 GTEXv5-ZP4G
510 GTEXv5-ZPCL
511 GTEXv5-ZPIC
512 GTEXv5-ZPU1
513 GTEXv5-ZQG8
514 GTEXv5-ZQUD
515 GTEXv5-ZT9W
516 GTEXv5-ZT9X
517 GTEXv5-ZTPG
518 GTEXv5-ZTSS
519 GTEXv5-ZTTD
520 GTEXv5-ZTX8
521 GTEXv5-ZU9S
522 GTEXv5-ZUA1
523 GTEXv5-ZV68
524 GTEXv5-ZV6S
525 GTEXv5-ZV7C
526 GTEXv5-ZVE1
527 GTEXv5-ZVE2
528 GTEXv5-ZVP2
529 GTEXv5-ZVT2
530 GTEXv5-ZVT3
531 GTEXv5-ZVT4
532 GTEXv5-ZVTK
533 GTEXv5-ZVZO
534 GTEXv5-ZVZP
535 GTEXv5-ZVZQ
536 GTEXv5-ZWKS
537 GTEXv5-ZXES
538 GTEXv5-ZXG5
539 GTEXv5-ZY6K
540 GTEXv5-ZYFC
541 GTEXv5-ZYFD
542 GTEXv5-ZYFG
543 GTEXv5-ZYT6
544 GTEXv5-ZYVF
545 GTEXv5-ZYW4
546 GTEXv5-ZYWO
547 GTEXv5-ZYY3
548 GTEXv5-ZZ64
549 GTEXv5-ZZPT
550 GTEXv5-ZZPU

CITG Web services initiated January, 1994 as Portable Dictionary of the Mouse Genome; June 15, 2001 as WebQTL; and Jan 5, 2005 as GeneNetwork. This site is currently operated by Rob Williams, Pjotr Prins, Zachary Sloan, Arthur Centeno. Design and code by Pjotr Prins, Zach Sloan, Arthur Centeno, Danny Arends, Christian Fischer, Sam Ockman, Lei Yan, Xiaodong Zhou, Christian Fernandez, Ning Liu, Rudi Alberts, Elissa Chesler, Sujoy Roy, Evan G. Williams, Alexander G. Williams, Kenneth Manly, Jintao Wang, and Robert W. Williams, colleagues. Python Powered Registered with Nif
GeneNetwork support from:
  • The UT Center for Integrative and Translational Genomics
  • NIGMS Systems Genetics and Precision Medicine project (R01 GM123489, 2017-2021)
  • NIDA NIDA Core Center of Excellence in Transcriptomics, Systems Genetics, and the Addictome (P30 DA044223, 2017-2022)
  • NIA Translational Systems Genetics of Mitochondria, Metabolism, and Aging (R01AG043930, 2013-2018)
  • NIAAA Integrative Neuroscience Initiative on Alcoholism (U01 AA016662, U01 AA013499, U24 AA013513, U01 AA014425, 2006-2017)
  • NIDA, NIMH, and NIAAA (P20-DA 21131, 2001-2012)
  • NCI MMHCC (U01CA105417), NCRR, BIRN, (U24 RR021760)
    Join GeneNetwork Mailing List
    It took 0.613 second(s) for lily.uthsc.edu to generate this page