GTEx Human Ovary (Apr14) RPKM : ENSG00000080644.10: Display Trait

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Trait Data and Analysis for Record ID ENSG00000080644.10

Details and Links

Gene Symbol: CHRNA3
Aliases: LNCR2; NACHRA3; PAOD2
Description: cholinergic receptor, nicotinic, alpha 3 (neuronal)
Location: Chr 15 @ 78.887647 Mb on the minus strand
Target Score:
Species and Group: Human, GTEx
Database 3: GTEx Human Ovary (Apr14) RPKM
Resource Links: Gene OMIM UniGene HomoloGene
BioGPS STRING PANTHER Gemma ABA EBI GWAS Wiki-Pi

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Basic Statistics

Basic Table
Probability Plot
Bar Graph (by name)
Bar Graph (by rank)
Box Plot

Statistic Value
N of Samples 6
Mean 0.000
Median 0.000
Standard Error (SE) 0.000
Standard Deviation (SD) 0.000
Minimum 0.000
Maximum 0.000
Range (log2) 0.000
Range (fold) 1.000
Interquartile Range 1.000

This plot evaluates whether data are normally distributed. Different symbols represent different groups.

More about Normal Probability Plots and more about interpreting these plots from the glossary

More about Box Plots

Calculate Correlations

Sample r
Literature r
Tissue r

Database:
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Pearson Spearman Rank

The Sample Correlation is computed between trait data and any
other traits in the sample database selected above. Use Spearman Rank
when the sample size is small (<20) or when there are influential outliers.
Database:
Return:

The Literature Correlation (Lit r) between this gene and all other genes is computed
using the Semantic Gene Organizer and human, rat, and mouse data from PubMed.
Values are ranked by Lit r, but Sample r and Tissue r are also displayed.

More on using Lit r
Database:
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Pearson Spearman Rank

The Tissue Correlation (Tissue r) estimates the similarity of expression of two genes
or transcripts across different cells, tissues, or organs (glossary). Tissue correlations
are generated by analyzing expression in multiple samples usually taken from single cases.
Pearson and Spearman Rank correlations have been computed for all pairs of genes
using data from mouse samples.

Mapping Tools

mappingMethodId 2 has not been implemented for this dataset yet.

Review and Edit Data

Edit or delete values in the Trait Data boxes, and use the Reset option as needed.
  Block samples by index:
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  Options:

  Outliers highlighted in yellow can be hidden using the Hide Outliers button,
  and samples with no value (x) can be hidden by clicking Hide No Value .

Index Sample Value Sex Age
1 GTEX-N7MS M 60
2 GTEX-N7MT F 60
3 GTEX-NFK9 M 40
4 GTEX-NL3H M 60
5 GTEX-NL4W M 50
6 GTEX-NPJ7 F 60
7 GTEX-NPJ8 M 40
8 GTEX-O5YT M 20
9 GTEX-O5YV F 60
10 GTEX-O5YW M 50
11 GTEX-OHPJ M 60
12 GTEX-OHPK F 50
13 GTEX-OHPL F 60
14 GTEX-OHPM M 50
15 GTEX-OHPN F 60
16 GTEX-OIZF M 60
17 GTEX-OIZG M 50
18 GTEX-OIZH M 50
19 GTEX-OIZI M 40
20 GTEX-OOBJ M 60
21 GTEX-OOBK M 40
22 GTEX-OXRK F 50
23 GTEX-OXRL M 50
24 GTEX-OXRN M 50
25 GTEX-OXRO F 60
26 GTEX-OXRP F 60
27 GTEX-P44G M 30
28 GTEX-P44H M 40
29 GTEX-P4PP F 30
30 GTEX-P4PQ M 60
31 GTEX-P4QR M 60
32 GTEX-P4QS M 60
33 GTEX-P4QT F 50
34 GTEX-P78B F 40
35 GTEX-PLZ4 F 50
36 GTEX-PLZ5 M 50
37 GTEX-PLZ6 M 30
38 GTEX-POMQ F 20
39 GTEX-POYW M 60
40 GTEX-PSDG M 50
41 GTEX-PVOW M 40
42 GTEX-PW2O M 20
43 GTEX-PWCY F 20
44 GTEX-PWN1 F 40
45 GTEX-PWO3 F 60
46 GTEX-PWOO F 40
47 GTEX-PX3G F 20
48 GTEX-Q2AG F 40
49 GTEX-Q2AH M 40
50 GTEX-Q2AI M 40
51 GTEX-Q734 F 40
52 GTEX-QCQG F 50
53 GTEX-QDT8 F 30
54 GTEX-QDVJ M 50
55 GTEX-QDVN M 50
56 GTEX-QEG4 M 30
57 GTEX-QEG5 M 20
58 GTEX-QEL4 M 50
59 GTEX-QESD M 20
60 GTEX-QLQ7 M 60
61 GTEX-QLQW M 30
62 GTEX-QMR6 M 50
63 GTEX-QMRM M 50
64 GTEX-QV31 M 30
65 GTEX-QV44 M 50
66 GTEX-QVJO F 60
67 GTEX-QVUS F 60
68 GTEX-QXCU M 50
69 GTEX-R3RS F 40
70 GTEX-R45C F 60
71 GTEX-R53T F 50
72 GTEX-R55C M 40
73 GTEX-R55D M 50
74 GTEX-R55E M 20
75 GTEX-R55F M 50
76 GTEX-R55G F 40
77 GTEX-REY6 M 60
78 GTEX-RM2N M 50
79 GTEX-RN64 M 50
80 GTEX-RNOR F 50
81 GTEX-RTLS F 60
82 GTEX-RU1J F 20
83 GTEX-RU72 F 50
84 GTEX-RUSQ M 50
85 GTEX-RVPU M 50
86 GTEX-RVPV M 60
87 GTEX-RWS6 F 60
88 GTEX-RWSA M 40
89 GTEX-S32W F 50
90 GTEX-S33H M 30
91 GTEX-S341 F 40
92 GTEX-S3XE M 50
93 GTEX-S4P3 F 50
94 GTEX-S4Q7 M 20
95 GTEX-S4UY F 40
96 GTEX-S4Z8 M 60
97 GTEX-S7PM M 60
98 GTEX-S7SE M 50
99 GTEX-S7SF F 20
100 GTEX-S95S M 60
101 GTEX-SE5C F 40
102 GTEX-SIU7 M 50
103 GTEX-SIU8 M 50
104 GTEX-SJXC M 60
105 GTEX-SN8G F 50
106 GTEX-SNMC M 20
107 GTEX-SNOS M 40
108 GTEX-SSA3 M 60
109 GTEX-SUCS M 70
110 GTEX-T2IS F 20
111 GTEX-T2YK M 50
112 GTEX-T5JC M 20
113 GTEX-T5JW F 20
114 GTEX-T6MN M 50
115 GTEX-T6MO F 40
116 GTEX-T8EM M 40
117 GTEX-TKQ1 M 30
118 GTEX-TKQ2 M 50
119 GTEX-TMKS M 50
120 GTEX-TML8 F 40
121 GTEX-TMMY F 40
122 GTEX-TMZS M 60
123 GTEX-TSE9 F 60
124 GTEX-U3ZH M 30
125 GTEX-U3ZM M 40
126 GTEX-U3ZN F 30
127 GTEX-U412 M 60
128 GTEX-U4B1 M 40
129 GTEX-U8T8 M 60
130 GTEX-U8XE M 30
131 GTEX-UJHI F 50
132 GTEX-UJMC M 50
133 GTEX-UPIC F 20
134 GTEX-UPJH M 50
135 GTEX-UPK5 M 40
136 GTEX-UTHO M 60
137 GTEX-V1D1 M 50
138 GTEX-V955 M 60
139 GTEX-VJWN F 50
140 GTEX-VJYA M 60
141 GTEX-VUSG M 50
142 GTEX-VUSH M 30
143 GTEX-W5WG F 50
144 GTEX-W5X1 F 40
145 GTEX-WCDI M 50
146 GTEX-WEY5 F 40
147 GTEX-WFG7 M 20
148 GTEX-WFG8 M 20
149 GTEX-WFJO M 30
150 GTEX-WFON M 40
151 GTEX-WH7G M 40
152 GTEX-WHPG M 50
153 GTEX-WHSB M 50
154 GTEX-WHSE M 20
155 GTEX-WHWD M 50
156 GTEX-WI4N F 40
157 GTEX-WK11 M 50
158 GTEX-WL46 M 50
159 GTEX-WOFL M 60
160 GTEX-WOFM M 20
161 GTEX-WQUQ M 60
162 GTEX-WRHK F 20
163 GTEX-WRHU F 50
164 GTEX-WVLH M 50
165 GTEX-WWYW F 50
166 GTEX-WXYG F 50
167 GTEX-WY7C M 50
168 GTEX-WYBS F 60
169 GTEX-WYJK M 50
170 GTEX-WYVS F 40
171 GTEX-WZTO M 40
172 GTEX-X15G F 50
173 GTEX-X261 M 50
174 GTEX-X3Y1 M 40
175 GTEX-X4EO F 60
176 GTEX-X4EP F 60
177 GTEX-X4LF M 50
178 GTEX-X4XX M 60
179 GTEX-X4XY M 60
180 GTEX-X585 M 50
181 GTEX-X5EB M 40
182 GTEX-X62O M 50
183 GTEX-X8HC F 50
184 GTEX-XAJ8 M 40

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