Details and Links

Gene Symbol:		CHRNA3
Aliases:		CHRNA3; LNCR2; NACHRA3; PAOD2
Description:		cholinergic receptor, nicotinic, alpha 3
Location:		Chr 15 @ 78.887646 Mb
Target Score:
Species and Group:		Human, HB
Database 3:		HBTRC-MLC Human Cerebellum Agilent Normal (Jun11) mlratio
Resource Links:		Gene  OMIM  GenBank  HomoloGene
		BioGPS  STRING  PANTHER  Gemma  ABA  EBI GWAS  Wiki-Pi

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  Basic Statistics

Basic Table Probability Plot Bar Graph (by name) Bar Graph (by rank) Box Plot Statistic Value N of Samples 132 Mean -0.001 Median 0.044 Standard Error (SE) 0.020 Standard Deviation (SD) 0.224 Minimum -0.597 Maximum 0.372 Range (log2) 0.969 Range (fold) 1.958 Interquartile Range 1.245 This plot evaluates whether data are normally distributed. Different symbols represent different groups. More about Normal Probability Plots and more about interpreting these plots from the glossary More about Box Plots

  Calculate Correlations

Sample r Literature r Tissue r Database: HBTRC-MLC Human Cerebellum Agilent (Jun11) mlratio HBTRC-MLC Human Cerebellum Agilent Normal (Jun11) mlratio HBTRC-MLC Human Cerebellum Agilent AD (Jun11) mlratio HBTRC-MLC Human Cerebellum Agilent HD (Jun11) mlratio HBTRC-MLC Human Prefrontal Cortex Agilent (Jun11) mlratio HBTRC-MLC Human Prefrontal Cortex Agilent Normal (Jun11) mlratio HBTRC-MLC Human Prefrontal Cortex Agilent AD (Jun11) mlratio HBTRC-MLC Human Prefrontal Cortex Agilent HD (Jun11) mlratio HBTRC-MLC Human Visual Cortex Agilent (Jun11) mlratio HBTRC-MLC Human Visual Cortex Agilent Normal (Jun11) mlratio HBTRC-MLC Human Visual Cortex Agilent AD (Jun11) mlratio HBTRC-MLC Human Visual Cortex Agilent HD (Jun11) mlratio Return: top 25 top 50 top 100 top 200 top 500 top 1000 top 2000 top 5000 top 10000 top 15000 top 20000 top 30000 top 40000 top 60000 Pearson    Spearman Rank The Sample Correlation is computed between trait data and any other traits in the sample database selected above. Use Spearman Rank when the sample size is small (<20) or when there are influential outliers. Database: HBTRC-MLC Human Cerebellum Agilent (Jun11) mlratio HBTRC-MLC Human Cerebellum Agilent Normal (Jun11) mlratio HBTRC-MLC Human Cerebellum Agilent AD (Jun11) mlratio HBTRC-MLC Human Cerebellum Agilent HD (Jun11) mlratio HBTRC-MLC Human Prefrontal Cortex Agilent (Jun11) mlratio HBTRC-MLC Human Prefrontal Cortex Agilent Normal (Jun11) mlratio HBTRC-MLC Human Prefrontal Cortex Agilent AD (Jun11) mlratio HBTRC-MLC Human Prefrontal Cortex Agilent HD (Jun11) mlratio HBTRC-MLC Human Visual Cortex Agilent (Jun11) mlratio HBTRC-MLC Human Visual Cortex Agilent Normal (Jun11) mlratio HBTRC-MLC Human Visual Cortex Agilent AD (Jun11) mlratio HBTRC-MLC Human Visual Cortex Agilent HD (Jun11) mlratio Return: top 25 top 50 top 100 top 200 top 500 top 1000 top 2000 top 5000 top 10000 top 15000 top 20000 top 30000 top 40000 top 60000 The Literature Correlation (Lit r) between this gene and all other genes is computed using the Semantic Gene Organizer and human, rat, and mouse data from PubMed. Values are ranked by Lit r, but Sample r and Tissue r are also displayed. More on using Lit r Database: HBTRC-MLC Human Cerebellum Agilent (Jun11) mlratio HBTRC-MLC Human Cerebellum Agilent Normal (Jun11) mlratio HBTRC-MLC Human Cerebellum Agilent AD (Jun11) mlratio HBTRC-MLC Human Cerebellum Agilent HD (Jun11) mlratio HBTRC-MLC Human Prefrontal Cortex Agilent (Jun11) mlratio HBTRC-MLC Human Prefrontal Cortex Agilent Normal (Jun11) mlratio HBTRC-MLC Human Prefrontal Cortex Agilent AD (Jun11) mlratio HBTRC-MLC Human Prefrontal Cortex Agilent HD (Jun11) mlratio HBTRC-MLC Human Visual Cortex Agilent (Jun11) mlratio HBTRC-MLC Human Visual Cortex Agilent Normal (Jun11) mlratio HBTRC-MLC Human Visual Cortex Agilent AD (Jun11) mlratio HBTRC-MLC Human Visual Cortex Agilent HD (Jun11) mlratio Return: top 25 top 50 top 100 top 200 top 500 top 1000 top 2000 top 5000 top 10000 top 15000 top 20000 top 30000 top 40000 top 60000 Pearson    Spearman Rank The Tissue Correlation (Tissue r) estimates the similarity of expression of two genes or transcripts across different cells, tissues, or organs (glossary). Tissue correlations are generated by analyzing expression in multiple samples usually taken from single cases. Pearson and Spearman Rank correlations have been computed for all pairs of genes using data from mouse samples.

  Mapping Tools

Mapping options are disabled for data not matched with genotypes.

  Review and Edit Data

Edit or delete values in the Trait Data boxes, and use the Reset option as needed.   Block samples by index:           Options:                          Outliers highlighted in  yellow  can be hidden using the Hide Outliers button,   and samples with no value (x) can be hidden by clicking Hide No Value . Index Sample Value 1 HB_023_N 2 HB_026_N 3 HB_029_N 4 HB_030_N 5 HB_058_N 6 HB_064_N 7 HB_083_N 8 HB_086_N 9 HB_091_N 10 HB_092_N 11 HB_102_N 12 HB_119_N 13 HB_143_N 14 HB_144_N 15 HB_147_N 16 HB_161_N 17 HB_162_N 18 HB_166_N 19 HB_183_N 20 HB_206_N 21 HB_215_N 22 HB_218_N 23 HB_220_N 24 HB_223_N 25 HB_226_N 26 HB_227_N 27 HB_241_N 28 HB_243_N 29 HB_247_N 30 HB_257_N 31 HB_264_N 32 HB_269_N 33 HB_293_N 34 HB_295_N 35 HB_300_N 36 HB_311_N 37 HB_324_N 38 HB_332_N 39 HB_340_N 40 HB_346_N 41 HB_350_N 42 HB_360_N 43 HB_365_N 44 HB_367_N 45 HB_379_N 46 HB_382_N 47 HB_396_N 48 HB_398_N 49 HB_400_N 50 HB_403_N 51 HB_414_N 52 HB_416_N 53 HB_418_N 54 HB_421_N 55 HB_423_N 56 HB_425_N 57 HB_426_N 58 HB_427_N 59 HB_431_N 60 HB_432_N 61 HB_433_N 62 HB_436_N 63 HB_440_N 64 HB_443_N 65 HB_446_N 66 HB_447_N 67 HB_449_N 68 HB_450_N 69 HB_452_N 70 HB_453_N 71 HB_458_N 72 HB_462_N 73 HB_463_N 74 HB_464_N 75 HB_468_N 76 HB_472_N 77 HB_475_N 78 HB_476_N 79 HB_480_N 80 HB_485_N 81 HB_486_N 82 HB_495_N 83 HB_497_N 84 HB_500_N 85 HB_501_N 86 HB_504_N 87 HB_505_N 88 HB_507_N 89 HB_508_N 90 HB_509_N 91 HB_512_N 92 HB_516_N 93 HB_519_N 94 HB_532_N 95 HB_540_N 96 HB_541_N 97 HB_542_N 98 HB_544_N 99 HB_547_N 100 HB_551_N 101 HB_557_N 102 HB_560_N 103 HB_563_N 104 HB_569_N 105 HB_570_N 106 HB_572_N 107 HB_577_N 108 HB_579_N 109 HB_580_N 110 HB_581_N 111 HB_584_N 112 HB_586_N 113 HB_587_N 114 HB_589_N 115 HB_595_N 116 HB_601_N 117 HB_604_N 118 HB_609_N 119 HB_614_N 120 HB_618_N 121 HB_622_N 122 HB_625_N 123 HB_628_N 124 HB_631_N 125 HB_637_N 126 HB_638_N 127 HB_640_N 128 HB_641_N 129 HB_643_N 130 HB_644_N 131 HB_645_N 132 HB_648_N 133 HB_650_N 134 HB_651_N 135 HB_653_N 136 HB_658_N 137 HB_659_N 138 HB_660_N 139 HB_662_N 140 HB_663_N 141 HB_670_N 142 HB_675_N 143 HB_676_N 144 HB_677_N 145 HB_679_N 146 HB_687_N 147 HB_689_N 148 HB_694_N 149 HB_697_N 150 HB_700_N 151 HB_701_N 152 HB_711_N 153 HB_714_N 154 HB_717_N 155 HB_721_N 156 HB_726_N 157 HB_730_N 158 HB_735_N 159 HB_737_N 160 HB_738_N 161 HB_747_N 162 HB_759_N 163 HB_764_N 164 HB_765_N 165 HB_767_N 166 HB_770_N 167 HB_772_N 168 HB_040_AD 169 HB_045_AD 170 HB_048_AD 171 HB_053_AD 172 HB_055_AD 173 HB_068_AD 174 HB_082_AD 175 HB_085_AD 176 HB_087_AD 177 HB_088_AD 178 HB_089_AD 179 HB_093_AD 180 HB_095_AD 181 HB_096_AD 182 HB_097_AD 183 HB_099_AD 184 HB_100_AD 185 HB_103_AD 186 HB_104_AD 187 HB_111_AD 188 HB_112_AD 189 HB_113_AD 190 HB_114_AD 191 HB_116_AD 192 HB_117_AD 193 HB_118_AD 194 HB_120_AD 195 HB_122_AD 196 HB_123_AD 197 HB_124_AD 198 HB_125_AD 199 HB_126_AD 200 HB_127_AD 201 HB_128_AD 202 HB_130_AD 203 HB_131_AD 204 HB_132_AD 205 HB_134_AD 206 HB_135_AD 207 HB_136_AD 208 HB_137_AD 209 HB_138_AD 210 HB_140_AD 211 HB_146_AD 212 HB_148_AD 213 HB_149_AD 214 HB_150_AD 215 HB_151_AD 216 HB_154_AD 217 HB_155_AD 218 HB_156_AD 219 HB_157_AD 220 HB_158_AD 221 HB_160_AD 222 HB_163_AD 223 HB_164_AD 224 HB_165_AD 225 HB_167_AD 226 HB_168_AD 227 HB_169_AD 228 HB_170_AD 229 HB_171_AD 230 HB_174_AD 231 HB_176_AD 232 HB_178_AD 233 HB_179_AD 234 HB_181_AD 235 HB_184_AD 236 HB_190_AD 237 HB_193_AD 238 HB_194_AD 239 HB_195_AD 240 HB_197_AD 241 HB_198_AD 242 HB_199_AD 243 HB_200_AD 244 HB_201_AD 245 HB_204_AD 246 HB_205_AD 247 HB_208_AD 248 HB_209_AD 249 HB_211_AD 250 HB_212_AD 251 HB_216_AD 252 HB_217_AD 253 HB_219_AD 254 HB_221_AD 255 HB_222_AD 256 HB_224_AD 257 HB_229_AD 258 HB_230_AD 259 HB_231_AD 260 HB_232_AD 261 HB_234_AD 262 HB_236_AD 263 HB_237_AD 264 HB_238_AD 265 HB_240_AD 266 HB_244_AD 267 HB_245_AD 268 HB_246_AD 269 HB_250_AD 270 HB_251_AD 271 HB_252_AD 272 HB_253_AD 273 HB_258_AD 274 HB_259_AD 275 HB_260_AD 276 HB_262_AD 277 HB_263_AD 278 HB_265_AD 279 HB_267_AD 280 HB_268_AD 281 HB_273_AD 282 HB_274_AD 283 HB_275_AD 284 HB_276_AD 285 HB_277_AD 286 HB_278_AD 287 HB_280_AD 288 HB_281_AD 289 HB_283_AD 290 HB_284_AD 291 HB_285_AD 292 HB_286_AD 293 HB_287_AD 294 HB_288_AD 295 HB_289_AD 296 HB_290_AD 297 HB_292_AD 298 HB_296_AD 299 HB_298_AD 300 HB_299_AD 301 HB_302_AD 302 HB_303_AD 303 HB_305_AD 304 HB_306_AD 305 HB_307_AD 306 HB_308_AD 307 HB_309_AD 308 HB_310_AD 309 HB_312_AD 310 HB_313_AD 311 HB_314_AD 312 HB_315_AD 313 HB_316_AD 314 HB_317_AD 315 HB_318_AD 316 HB_319_AD 317 HB_320_AD 318 HB_322_AD 319 HB_325_AD 320 HB_328_AD 321 HB_330_AD 322 HB_331_AD 323 HB_333_AD 324 HB_334_AD 325 HB_335_AD 326 HB_337_AD 327 HB_338_AD 328 HB_342_AD 329 HB_343_AD 330 HB_345_AD 331 HB_347_AD 332 HB_349_AD 333 HB_352_AD 334 HB_353_AD 335 HB_354_AD 336 HB_356_AD 337 HB_357_AD 338 HB_358_AD 339 HB_359_AD 340 HB_362_AD 341 HB_363_AD 342 HB_364_AD 343 HB_369_AD 344 HB_372_AD 345 HB_373_AD 346 HB_374_AD 347 HB_375_AD 348 HB_376_AD 349 HB_377_AD 350 HB_378_AD 351 HB_380_AD 352 HB_383_AD 353 HB_386_AD 354 HB_388_AD 355 HB_389_AD 356 HB_391_AD 357 HB_392_AD 358 HB_394_AD 359 HB_395_AD 360 HB_397_AD 361 HB_399_AD 362 HB_401_AD 363 HB_404_AD 364 HB_406_AD 365 HB_409_AD 366 HB_410_AD 367 HB_411_AD 368 HB_412_AD 369 HB_413_AD 370 HB_419_AD 371 HB_420_AD 372 HB_422_AD 373 HB_428_AD 374 HB_429_AD 375 HB_430_AD 376 HB_434_AD 377 HB_435_AD 378 HB_437_AD 379 HB_438_AD 380 HB_439_AD 381 HB_441_AD 382 HB_442_AD 383 HB_445_AD 384 HB_448_AD 385 HB_451_AD 386 HB_454_AD 387 HB_455_AD 388 HB_456_AD 389 HB_459_AD 390 HB_460_AD 391 HB_461_AD 392 HB_465_AD 393 HB_469_AD 394 HB_471_AD 395 HB_473_AD 396 HB_474_AD 397 HB_477_AD 398 HB_479_AD 399 HB_481_AD 400 HB_482_AD 401 HB_483_AD 402 HB_484_AD 403 HB_488_AD 404 HB_489_AD 405 HB_490_AD 406 HB_491_AD 407 HB_492_AD 408 HB_493_AD 409 HB_494_AD 410 HB_496_AD 411 HB_498_AD 412 HB_499_AD 413 HB_502_AD 414 HB_503_AD 415 HB_506_AD 416 HB_510_AD 417 HB_514_AD 418 HB_517_AD 419 HB_520_AD 420 HB_521_AD 421 HB_523_AD 422 HB_524_AD 423 HB_525_AD 424 HB_526_AD 425 HB_529_AD 426 HB_531_AD 427 HB_533_AD 428 HB_534_AD 429 HB_535_AD 430 HB_536_AD 431 HB_538_AD 432 HB_539_AD 433 HB_543_AD 434 HB_545_AD 435 HB_546_AD 436 HB_548_AD 437 HB_550_AD 438 HB_552_AD 439 HB_553_AD 440 HB_554_AD 441 HB_555_AD 442 HB_556_AD 443 HB_558_AD 444 HB_559_AD 445 HB_561_AD 446 HB_562_AD 447 HB_564_AD 448 HB_565_AD 449 HB_566_AD 450 HB_567_AD 451 HB_568_AD 452 HB_571_AD 453 HB_573_AD 454 HB_574_AD 455 HB_575_AD 456 HB_576_AD 457 HB_582_AD 458 HB_583_AD 459 HB_585_AD 460 HB_588_AD 461 HB_590_AD 462 HB_591_AD 463 HB_592_AD 464 HB_594_AD 465 HB_596_AD 466 HB_597_AD 467 HB_598_AD 468 HB_599_AD 469 HB_600_AD 470 HB_602_AD 471 HB_603_AD 472 HB_605_AD 473 HB_606_AD 474 HB_607_AD 475 HB_608_AD 476 HB_611_AD 477 HB_612_AD 478 HB_613_AD 479 HB_615_AD 480 HB_619_AD 481 HB_620_AD 482 HB_621_AD 483 HB_623_AD 484 HB_624_AD 485 HB_627_AD 486 HB_629_AD 487 HB_630_AD 488 HB_632_AD 489 HB_633_AD 490 HB_634_AD 491 HB_635_AD 492 HB_636_AD 493 HB_642_AD 494 HB_646_AD 495 HB_647_AD 496 HB_652_AD 497 HB_654_AD 498 HB_655_AD 499 HB_656_AD 500 HB_657_AD 501 HB_664_AD 502 HB_665_AD 503 HB_666_AD 504 HB_668_AD 505 HB_669_AD 506 HB_672_AD 507 HB_673_AD 508 HB_674_AD 509 HB_678_AD 510 HB_680_AD 511 HB_684_AD 512 HB_685_AD 513 HB_686_AD 514 HB_688_AD 515 HB_690_AD 516 HB_693_AD 517 HB_695_AD 518 HB_696_AD 519 HB_698_AD 520 HB_699_AD 521 HB_702_AD 522 HB_703_AD 523 HB_704_AD 524 HB_705_AD 525 HB_706_AD 526 HB_708_AD 527 HB_710_AD 528 HB_712_AD 529 HB_713_AD 530 HB_715_AD 531 HB_718_AD 532 HB_719_AD 533 HB_720_AD 534 HB_722_AD 535 HB_723_AD 536 HB_724_AD 537 HB_727_AD 538 HB_728_AD 539 HB_729_AD 540 HB_731_AD 541 HB_733_AD 542 HB_736_AD 543 HB_739_AD 544 HB_740_AD 545 HB_741_AD 546 HB_742_AD 547 HB_743_AD 548 HB_745_AD 549 HB_746_AD 550 HB_749_AD 551 HB_751_AD 552 HB_752_AD 553 HB_753_AD 554 HB_754_AD 555 HB_755_AD 556 HB_756_AD 557 HB_757_AD 558 HB_761_AD 559 HB_763_AD 560 HB_773_AD 561 HB_775_AD 562 HB_776_AD 563 HB_777_AD 564 HB_779_AD 565 HB_781_AD 566 HB_782_AD 567 HB_783_AD 568 HB_784_AD 569 HB_785_AD 570 HB_786_AD 571 HB_787_AD 572 HB_788_AD 573 HB_789_AD 574 HB_791_AD 575 HB_792_AD 576 HB_793_AD 577 HB_794_AD 578 HB_795_AD 579 HB_796_AD 580 HB_797_AD 581 HB_798_AD 582 HB_799_AD 583 HB_801_AD 584 HB_803_AD 585 HB_001_HD 586 HB_002_HD 587 HB_003_HD 588 HB_004_HD 589 HB_005_HD 590 HB_006_HD 591 HB_007_HD 592 HB_008_HD 593 HB_009_HD 594 HB_010_HD 595 HB_011_HD 596 HB_012_HD 597 HB_013_HD 598 HB_014_HD 599 HB_015_HD 600 HB_016_HD 601 HB_017_HD 602 HB_018_HD 603 HB_019_HD 604 HB_020_HD 605 HB_021_HD 606 HB_022_HD 607 HB_024_HD 608 HB_025_HD 609 HB_027_HD 610 HB_028_HD 611 HB_031_HD 612 HB_032_HD 613 HB_033_HD 614 HB_034_HD 615 HB_035_HD 616 HB_036_HD 617 HB_037_HD 618 HB_038_HD 619 HB_039_HD 620 HB_041_HD 621 HB_042_HD 622 HB_043_HD 623 HB_044_HD 624 HB_046_HD 625 HB_047_HD 626 HB_049_HD 627 HB_050_HD 628 HB_051_HD 629 HB_052_HD 630 HB_054_HD 631 HB_056_HD 632 HB_057_HD 633 HB_059_HD 634 HB_060_HD 635 HB_061_HD 636 HB_062_HD 637 HB_063_HD 638 HB_065_HD 639 HB_066_HD 640 HB_067_HD 641 HB_069_HD 642 HB_070_HD 643 HB_071_HD 644 HB_072_HD 645 HB_073_HD 646 HB_074_HD 647 HB_075_HD 648 HB_076_HD 649 HB_077_HD 650 HB_078_HD 651 HB_079_HD 652 HB_080_HD 653 HB_081_HD 654 HB_084_HD 655 HB_090_HD 656 HB_094_HD 657 HB_098_HD 658 HB_101_HD 659 HB_105_HD 660 HB_106_HD 661 HB_107_HD 662 HB_108_HD 663 HB_109_HD 664 HB_110_HD 665 HB_115_HD 666 HB_121_HD 667 HB_129_HD 668 HB_133_HD 669 HB_139_HD 670 HB_141_HD 671 HB_142_HD 672 HB_145_HD 673 HB_152_HD 674 HB_153_HD 675 HB_159_HD 676 HB_172_HD 677 HB_173_HD 678 HB_175_HD 679 HB_177_HD 680 HB_180_HD 681 HB_182_HD 682 HB_185_HD 683 HB_186_HD 684 HB_187_HD 685 HB_188_HD 686 HB_189_HD 687 HB_191_HD 688 HB_192_HD 689 HB_196_HD 690 HB_202_HD 691 HB_203_HD 692 HB_207_HD 693 HB_210_HD 694 HB_213_HD 695 HB_214_HD 696 HB_225_HD 697 HB_228_HD 698 HB_233_HD 699 HB_235_HD 700 HB_239_HD 701 HB_242_HD 702 HB_248_HD 703 HB_249_HD 704 HB_254_HD 705 HB_255_HD 706 HB_256_HD 707 HB_261_HD 708 HB_266_HD 709 HB_270_HD 710 HB_271_HD 711 HB_272_HD 712 HB_279_HD 713 HB_282_HD 714 HB_291_HD 715 HB_294_HD 716 HB_297_HD 717 HB_301_HD 718 HB_304_HD 719 HB_321_HD 720 HB_323_HD 721 HB_326_HD 722 HB_327_HD 723 HB_329_HD 724 HB_336_HD 725 HB_339_HD 726 HB_341_HD 727 HB_344_HD 728 HB_348_HD 729 HB_351_HD 730 HB_355_HD 731 HB_361_HD 732 HB_366_HD 733 HB_368_HD 734 HB_370_HD 735 HB_371_HD 736 HB_381_HD 737 HB_384_HD 738 HB_385_HD 739 HB_387_HD 740 HB_390_HD 741 HB_393_HD 742 HB_402_HD 743 HB_405_HD 744 HB_407_HD 745 HB_408_HD 746 HB_415_HD 747 HB_417_HD 748 HB_424_HD 749 HB_444_HD 750 HB_457_HD 751 HB_466_HD 752 HB_467_HD 753 HB_470_HD 754 HB_478_HD 755 HB_487_HD 756 HB_511_HD 757 HB_513_HD 758 HB_515_HD 759 HB_518_HD 760 HB_522_HD 761 HB_527_HD 762 HB_528_HD 763 HB_530_HD 764 HB_537_HD 765 HB_549_HD 766 HB_578_HD 767 HB_593_HD 768 HB_610_HD 769 HB_616_HD 770 HB_617_HD 771 HB_626_HD 772 HB_639_HD 773 HB_649_HD 774 HB_661_HD 775 HB_667_HD 776 HB_671_HD 777 HB_681_HD 778 HB_682_HD 779 HB_683_HD 780 HB_691_HD 781 HB_692_HD 782 HB_707_HD 783 HB_709_HD 784 HB_716_HD 785 HB_725_HD 786 HB_732_HD 787 HB_734_HD 788 HB_744_HD 789 HB_748_HD 790 HB_750_HD 791 HB_758_HD 792 HB_760_HD 793 HB_762_HD 794 HB_766_HD 795 HB_768_HD 796 HB_769_HD 797 HB_771_HD 798 HB_774_HD 799 HB_778_HD 800 HB_780_HD 801 HB_790_HD 802 HB_800_HD 803 HB_802_HD