Details and Links

Gene Symbol:		CHRNA3
Aliases:		CHRNA3; LNCR2; NACHRA3; PAOD2
Description:		cholinergic receptor, nicotinic, alpha 3
Location:		Chr 15 @ 78.887646 Mb
Target Score:
Species and Group:		Human, HLC
Database 3:		GSE9588 Human Liver Normal (Mar11) Females
Resource Links:		Gene  OMIM  GenBank  HomoloGene
		BioGPS  STRING  PANTHER  Gemma  ABA  EBI GWAS  Wiki-Pi

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  Basic Statistics

Basic Table Probability Plot Bar Graph (by name) Bar Graph (by rank) Box Plot Statistic Value N of Samples 193 Mean -0.057 Median -0.045 Standard Error (SE) 0.007 Standard Deviation (SD) 0.095 Minimum -0.875 Maximum 0.288 Range (log2) 1.164 Range (fold) 2.241 Interquartile Range 1.057 This plot evaluates whether data are normally distributed. Different symbols represent different groups. More about Normal Probability Plots and more about interpreting these plots from the glossary More about Box Plots

  Calculate Correlations

Sample r Literature r Tissue r Database: HLC Published Phenotypes GSE9588 Human Liver Normal (Mar11) Both Sexes GSE9588 Human Liver Normal (Mar11) Males GSE9588 Human Liver Normal (Mar11) Females Return: top 25 top 50 top 100 top 200 top 500 top 1000 top 2000 top 5000 top 10000 top 15000 top 20000 top 30000 top 40000 top 60000 Pearson    Spearman Rank The Sample Correlation is computed between trait data and any other traits in the sample database selected above. Use Spearman Rank when the sample size is small (<20) or when there are influential outliers. Database: HLC Published Phenotypes GSE9588 Human Liver Normal (Mar11) Both Sexes GSE9588 Human Liver Normal (Mar11) Males GSE9588 Human Liver Normal (Mar11) Females Return: top 25 top 50 top 100 top 200 top 500 top 1000 top 2000 top 5000 top 10000 top 15000 top 20000 top 30000 top 40000 top 60000 The Literature Correlation (Lit r) between this gene and all other genes is computed using the Semantic Gene Organizer and human, rat, and mouse data from PubMed. Values are ranked by Lit r, but Sample r and Tissue r are also displayed. More on using Lit r Database: HLC Published Phenotypes GSE9588 Human Liver Normal (Mar11) Both Sexes GSE9588 Human Liver Normal (Mar11) Males GSE9588 Human Liver Normal (Mar11) Females Return: top 25 top 50 top 100 top 200 top 500 top 1000 top 2000 top 5000 top 10000 top 15000 top 20000 top 30000 top 40000 top 60000 Pearson    Spearman Rank The Tissue Correlation (Tissue r) estimates the similarity of expression of two genes or transcripts across different cells, tissues, or organs (glossary). Tissue correlations are generated by analyzing expression in multiple samples usually taken from single cases. Pearson and Spearman Rank correlations have been computed for all pairs of genes using data from mouse samples.

  Mapping Tools

mappingMethodId 2 has not been implemented for this dataset yet.

  Review and Edit Data

Edit or delete values in the Trait Data boxes, and use the Reset option as needed.   Block samples by index:           Options:                          Outliers highlighted in  yellow  can be hidden using the Hide Outliers button,   and samples with no value (x) can be hidden by clicking Hide No Value . Index Sample Value 1 1110006 2 1110008 3 1110009 4 1110011 5 1110023 6 1110033 7 1110035 8 1110043 9 1110044 10 1110063 11 1110066 12 1110070 13 1110071 14 1110072 15 1110075 16 1110076 17 1110077 18 1110081 19 1110082 20 1110083 21 1110085 22 1110086 23 1110087 24 1110088 25 1110090 26 1110094 27 1110095 28 1110096 29 1110097 30 1110099 31 1110102 32 1110103 33 1110105 34 1110106 35 1110107 36 1110109 37 1110110 38 1110111 39 1110112 40 1110113 41 1110114 42 1110117 43 1110119 44 1110121 45 1110122 46 1110123 47 1110125 48 1110126 49 1110128 50 1110129 51 1110130 52 1110131 53 1110132 54 1110133 55 1110135 56 1110137 57 1110138 58 1110139 59 1110140 60 1110143 61 1110144 62 1110145 63 1110146 64 1110147 65 1110149 66 1110150 67 1110164 68 1110165 69 1110166 70 1110180 71 1110181 72 1110184 73 1110185 74 1110188 75 1110189 76 1110191 77 1110192 78 1110193 79 1110194 80 1110195 81 1110196 82 1110197 83 1110200 84 1110201 85 1110202 86 1110203 87 1110204 88 1110205 89 1110206 90 1110208 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