NIA-UTHSC Midbrain CIE Affy MTA 1.0 Exon Level (Apr17) RMA : JUC0900011024.mm.1: Display Trait

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Trait Data and Analysis for Record ID JUC0900011024.mm.1

Details and Links

Gene Symbol: Chrna3
Aliases: (a)3; A730007P14Rik; Acra-3; Acra3
Description: cholinergic receptor, nicotinic, alpha 3 (neuronal)
Location: Chr 9 @ 52.25475 Mb on the minus strand
Target Score:
Species and Group: Mouse, CIE-RMA
Database 3: NIA-UTHSC Midbrain CIE Affy MTA 1.0 Exon Level (Apr17) RMA
Resource Links: Gene UniGene HomoloGene
UCSC BioGPS STRING PANTHER Gemma ABA EBI GWAS Wiki-Pi

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Basic Statistics

Include:

Basic Table
Probability Plot
Bar Graph (by name)
Bar Graph (by rank)
Box Plot

Statistic Value
N of Samples 64
Mean 9.568
Median 9.568
Standard Error (SE) 0.045
Standard Deviation (SD) 0.360
Minimum 8.585
Maximum 10.195
Range (log2) 1.610
Range (fold) 3.053
Interquartile Range 1.551

This plot evaluates whether data are normally distributed. Different symbols represent different groups.

More about Normal Probability Plots and more about interpreting these plots from the glossary

More about Box Plots

Basic Table
Probability Plot
Bar Graph (by name)
Bar Graph (by rank)
Box Plot

Statistic Value
N of Samples 63
Mean 9.574
Median 9.570
Standard Error (SE) 0.045
Standard Deviation (SD) 0.360
Minimum 8.585
Maximum 10.195
Range (log2) 1.610
Range (fold) 3.053
Interquartile Range 1.501

This plot evaluates whether data are normally distributed. Different symbols represent different groups.

More about Normal Probability Plots and more about interpreting these plots from the glossary

More about Box Plots
Fewer than 4 non-CIE-RMA case data were entered. No statistical analysis has been attempted.

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Sample r
Literature r
Tissue r

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Pearson Spearman Rank

The Sample Correlation is computed between trait data and any
other traits in the sample database selected above. Use Spearman Rank
when the sample size is small (<20) or when there are influential outliers.
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The Literature Correlation (Lit r) between this gene and all other genes is computed
using the Semantic Gene Organizer and human, rat, and mouse data from PubMed.
Values are ranked by Lit r, but Sample r and Tissue r are also displayed.

More on using Lit r
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Pearson Spearman Rank

The Tissue Correlation (Tissue r) estimates the similarity of expression of two genes
or transcripts across different cells, tissues, or organs (glossary). Tissue correlations
are generated by analyzing expression in multiple samples usually taken from single cases.
Pearson and Spearman Rank correlations have been computed for all pairs of genes
using data from mouse samples.

Mapping Tools

Mapping options are disabled for data not matched with genotypes.

Review and Edit Data

Edit or delete values in the Trait Data boxes, and use the Reset option as needed.
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Index Sample Value Status Strain Time/Days Pyrazole Conc RIN PCA Batch Dis Batch Ext Batch MouseID
1 MB01 CIE C57BL/6J 0.333 PZ 224.611 9 2 1 1 12
2 MB02 AIR DBA/2J 3 NO 195.15 9.2 2 1 1 50
3 MB03 AIR C57BL/6J 14 PZ 299.415 9.5 2 1 1 2
4 MB04 AIR DBA/2J 7 PZ 300.033 7.6 2 1 1 60
5 MB05 CIE C57BL/6J 14 PZ 249.226 7.2 1 1 1 4
6 MB06 AIR DBA/2J 7 PZ 161.526 7.3 1 1 1 69
7 MB07 CIE C57BL/6J 3 PZ 326.862 9.5 2 1 1 8
8 MB08 AIR DBA/2J 0.333 PZ 352.559 7.9 2 1 1 41
9 MB09 AIR DBA/2J 14 PZ 354.218 8.8 2 2 1 75
10 MB10 AIR C57BL/6J 3 PZ 280.396 9.6 2 2 1 23
11 MB11 AIR DBA/2J 3 PZ 180.312 7.2 1 2 1 49
12 MB12 CIE DBA/2J 3 PZ 225.072 NA 2 2 1 58
13 MB13 CIE C57BL/6J 14 PZ 299.623 7.4 2 3 1 21
14 MB14 CIE DBA/2J 3 PZ 70.977 7.5 2 3 1 63
15 MB15 AIR DBA/2J 0.333 PZ 284.115 7.9 2 3 1 46
16 MB16 AIR DBA/2J 0.333 PZ 338.791 7.7 2 3 1 45
17 MB17 AIR C57BL/6J 3 NO 449.851 7.8 2 3 1 28
18 MB18 AIR DBA/2J 14 PZ 320.081 7.9 2 3 1 78
19 MB19 CIE DBA/2J 14 PZ 234.795 7.8 2 3 1 77
20 MB20 CIE DBA/2J 7 PZ 468.728 7.8 2 3 1 71
21 MB21 AIR DBA/2J 7 PZ 296.386 7.9 2 3 1 68
22 MB22 CIE C57BL/6J 0.333 PZ 398.481 8 2 3 1 29
23 MB23 CIE DBA/2J 7 PZ 275.813 7.8 2 1 2 67
24 MB24 AIR C57BL/6J 0.333 PZ 132.589 6.8 1 1 2 1
25 MB25 CIE C57BL/6J 3 NO 189.666 7.9 1 1 2 14
26 MB26 CIE DBA/2J 0.333 PZ 310.878 9.4 2 1 2 42
27 MB27 CIE DBA/2J 3 PZ 211.576 9 2 1 2 55
28 MB28 CIE DBA/2J 7 PZ 287.696 7.6 2 1 2 73
29 MB29 AIR DBA/2J 3 PZ 317.532 7.8 2 1 2 48
30 MB30 AIR DBA/2J 7 PZ 294.808 7.8 2 2 2 61
31 MB31 CIE C57BL/6J 0.333 PZ 209.301 9 2 2 2 20
32 MB32 CIE DBA/2J 14 PZ 120.953 8.2 1 2 2 76
33 MB33 AIR C57BL/6J 14 PZ 271.808 8.8 2 2 2 5
34 MB34 CIE C57BL/6J 7 PZ 289.261 8 2 2 2 37
35 MB35 CIE C57BL/6J 3 PZ 306.294 9.1 2 3 2 19
36 MB36 AIR DBA/2J 3 PZ 265.964 7.8 2 3 2 56
37 MB37 CIE DBA/2J 3 NO 259.741 9.2 2 3 2 65
38 MB38 AIR DBA/2J 14 PZ 371 8 2 3 2 80
39 MB39 CIE C57BL/6J 14 PZ 349.451 7.7 2 3 2 31
40 MB40 AIR C57BL/6J 7 PZ 403.083 8.9 3 3 2 39
41 MB41 CIE DBA/2J 3 PZ 505.547 8.9 3 3 2 62
42 MB42 CIE DBA/2J 0.333 PZ 441.549 8.8 3 3 2 52
43 MB43 AIR DBA/2J 3 PZ 519.427 8.8 3 3 2 51
44 MB44 AIR C57BL/6J 3 NO 772.361 8.8 3 1 3 35
45 MB45 AIR DBA/2J 14 PZ 598.185 8.9 3 1 3 72
46 MB46 CIE C57BL/6J 7 PZ 824.974 8.7 3 1 3 32
47 MB47 CIE DBA/2J 14 PZ 495.046 9.4 3 1 3 74
48 MB48 CIE DBA/2J 0.333 PZ 667.036 9.4 3 1 3 54
49 MB49 AIR C57BL/6J 7 PZ 760.367 9.2 3 1 3 24
50 MB50 AIR C57BL/6J 3 PZ 701.152 9.2 3 1 3 9
51 MB51 CIE DBA/2J 3 NO 579.22 8.3 3 2 3 66
52 MB52 CIE DBA/2J 0.333 PZ 636.091 9.4 3 2 3 44
53 MB53 AIR C57BL/6J 7 PZ 739.127 9.5 3 2 3 34
54 MB54 AIR C57BL/6J 0.333 PZ 667.933 9.2 3 2 3 7
55 MB55 CIE C57BL/6J 3 NO 605.937 9.2 3 3 3 36
56 MB56 AIR DBA/2J 0.333 PZ 639.161 9.5 3 3 3 43
57 MB57 CIE DBA/2J 7 PZ 630.735 9.4 3 3 3 70
58 MB58 AIR DBA/2J 3 NO 548.647 9.5 3 3 3 59
59 MB59 AIR C57BL/6J 14 PZ 689.793 9.4 3 3 3 15
60 MB60 AIR C57BL/6J 0.333 PZ 580.462 9.4 3 3 3 27
61 MB61 AIR C57BL/6J 3 PZ 577.826 8.2 3 3 3 30
62 MB62 AIR DBA/2J 3 PZ 581.164 9 3 3 3 57
63 MB63 CIE C57BL/6J 3 PZ 748.421 8.6 3 3 3 38

Index Sample Value Status Strain Time/Days Pyrazole Conc RIN PCA Batch Dis Batch Ext Batch MouseID
1 MB64 AIR DBA/2J 0.333 PZ 747.345 8.5 3 3 3 47

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