Details and Links

Gene Symbol:		Chrna3
Aliases:		(a)3; A730007P14Rik; Acra-3; Acra3; MGC104879
Description:		cholinergic receptor, nicotinic, alpha polypeptide 3
Location:		Chr 9 @ 55.010354 Mb on the minus strand
Target Score:
Species and Group:		Mouse, D2GM
Database 3:		JAX Retina (Apr18) RNA-Seq log2-Z
Resource Links:		Gene  OMIM  UniGene  HomoloGene
		UCSC  BioGPS  STRING  PANTHER  Gemma  ABA  EBI GWAS  Wiki-Pi

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  Basic Statistics

Include: All Cases D2GM Only Non-D2GM Only    

Basic Table Probability Plot Bar Graph (by name) Bar Graph (by rank) Box Plot Statistic Value N of Samples 61 Mean 5.801 Median 5.828 Standard Error (SE) 0.072 Standard Deviation (SD) 0.560 Minimum 4.582 Maximum 6.878 Range (log2) 2.296 Range (fold) 4.911 Interquartile Range 1.725 This plot evaluates whether data are normally distributed. Different symbols represent different groups. More about Normal Probability Plots and more about interpreting these plots from the glossary More about Box Plots Basic Table Probability Plot Bar Graph (by name) Bar Graph (by rank) Box Plot Statistic Value N of Samples 60 Mean 5.803 Median 5.845 Standard Error (SE) 0.073 Standard Deviation (SD) 0.564 Minimum 4.582 Maximum 6.878 Range (log2) 2.296 Range (fold) 4.911 Interquartile Range 1.741 This plot evaluates whether data are normally distributed. Different symbols represent different groups. More about Normal Probability Plots and more about interpreting these plots from the glossary More about Box Plots Fewer than 4 non-D2GM case data were entered. No statistical analysis has been attempted.

  Calculate Correlations

Sample r Literature r Tissue r Database: D2GM Phenotypes JAX Retina (Apr18) RNA-Seq log2-Z Return: top 25 top 50 top 100 top 200 top 500 top 1000 top 2000 top 5000 top 10000 top 15000 top 20000 top 30000 top 40000 top 60000 Samples: D2GM Only Non-D2GM Only All Cases Pearson    Spearman Rank The Sample Correlation is computed between trait data and any other traits in the sample database selected above. Use Spearman Rank when the sample size is small (<20) or when there are influential outliers. Database: D2GM Phenotypes JAX Retina (Apr18) RNA-Seq log2-Z Return: top 25 top 50 top 100 top 200 top 500 top 1000 top 2000 top 5000 top 10000 top 15000 top 20000 top 30000 top 40000 top 60000 Samples: D2GM Only Non-D2GM Only All Cases The Literature Correlation (Lit r) between this gene and all other genes is computed using the Semantic Gene Organizer and human, rat, and mouse data from PubMed. Values are ranked by Lit r, but Sample r and Tissue r are also displayed. More on using Lit r Database: D2GM Phenotypes JAX Retina (Apr18) RNA-Seq log2-Z Return: top 25 top 50 top 100 top 200 top 500 top 1000 top 2000 top 5000 top 10000 top 15000 top 20000 top 30000 top 40000 top 60000 Samples: D2GM Only Non-D2GM Only All Cases Pearson    Spearman Rank The Tissue Correlation (Tissue r) estimates the similarity of expression of two genes or transcripts across different cells, tissues, or organs (glossary). Tissue correlations are generated by analyzing expression in multiple samples usually taken from single cases. Pearson and Spearman Rank correlations have been computed for all pairs of genes using data from mouse samples.

  Mapping Tools

mappingMethodId 2 has not been implemented for this dataset yet.

  Review and Edit Data

Edit or delete values in the Trait Data boxes, and use the Reset option as needed.   Block samples by index:         D2GM Only Non-D2GM Only       Options:                          Outliers highlighted in  yellow  can be hidden using the Hide Outliers button,   and samples with no value (x) can be hidden by clicking Hide No Value . Index Sample Value 1 DBA2J4MWC2017 2 DBA2J4MWC2018 3 DBA2J4MWC2019 4 DBA2J4MWC2020 5 DBA2J4MWC2021 6 DBA2J4MWC2026 7 DBA2J4MWC2027 8 DBA2J4MWC2030 9 DBA2J4MWC2034 10 DBA2J4MWC2038 11 DBA2J9MWC0246 12 DBA2J9MWC0250 13 DBA2J9MWC0262 14 DBA2J9MWC0299 15 DBA2J9MWC0306 16 DBA2J9MWC0360 17 DBA2J9MWC1000 18 DBA2J9MWC1002 19 DBA2J9MWC1003 20 DBA2J9MWC1004 21 DBA2J9MWC1040 22 DBA2J9MWC1041 23 DBA2J9MWC1042 24 DBA2J9MWC1043 25 DBA2J9MWC1044 26 DBA2J9MWC1045 27 DBA2J9MWC1070 28 DBA2J9MWC1071 29 DBA2J9MWC1072 30 DBA2J9MWC1073 31 DBA2J9MWC1076 32 DBA2J9MWC1077 33 DBA2J9MWC2023 34 DBA2J9MWC2024 35 DBA2J9MWC2036 36 DBA2J9NAM2001 37 DBA2J9NAM2002 38 DBA2J9NAM2003 39 DBA2J9NAM2004 40 DBA2J9NAM2006 41 DBA2J9NAM2009 42 DBA2J9NAM2012 43 Gpnmb4MWC0396 44 Gpnmb4MWC0469 45 Gpnmb4MWC0478 46 Gpnmb4MWC0481 47 Gpnmb4MWC1383 48 Gpnmb4MWC1384 49 Gpnmb4MWC2041 50 Gpnmb4MWC2042 51 Gpnmb4MWC2045 52 Gpnmb4MWC2047 53 Gpnmb4MWC2049 54 Gpnmb4MWC2050 55 Gpnmb4MWC2051 56 Gpnmb4MWC2052 57 Gpnmb4MWC2053 58 Gpnmb4MWC2055 59 Gpnmb4MWC2056 60 Gpnmb4MWC2057 61 Gpnmb4MWC2058   Index Sample Value 1 Gpnmb4MWC2058