KIN/YSM Human ITC Affy Hu-Exon 1.0 ST (Jul11) Quantile : 3634656: Display Trait

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Trait Data and Analysis for Record ID 3634656

Details and Links

Gene Symbol: CHRNA3
Aliases: CHRNA3; LNCR2; NACHRA3; PAOD2
Description: cholinergic receptor, nicotinic, alpha 3 (neuronal)
Location: Chr 15 @ 78.885394 Mb
Target Score:
Species and Group: Human, HSB
Database 3: Human Inferior Temporal Cortex Affy Hu-Exon 1.0 ST (Jul11) Quantile
Resource Links: Gene OMIM HomoloGene
BioGPS STRING PANTHER Gemma ABA EBI GWAS Wiki-Pi

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Basic Statistics

Include:

Basic Table
Probability Plot
Bar Graph (by name)
Bar Graph (by rank)
Box Plot

Statistic Value
N of Samples 48
Mean 6.710
Median 6.614
Standard Error (SE) 0.072
Standard Deviation (SD) 0.502
Minimum 5.696
Maximum 8.341
Range (log2) 2.645
Range (fold) 6.255
Interquartile Range 1.456

This plot evaluates whether data are normally distributed. Different symbols represent different groups.

More about Normal Probability Plots and more about interpreting these plots from the glossary

More about Box Plots

Basic Table
Probability Plot
Bar Graph (by name)
Bar Graph (by rank)
Box Plot

Statistic Value
N of Samples 47
Mean 6.710
Median 6.608
Standard Error (SE) 0.074
Standard Deviation (SD) 0.507
Minimum 5.696
Maximum 8.341
Range (log2) 2.645
Range (fold) 6.255
Interquartile Range 1.456

This plot evaluates whether data are normally distributed. Different symbols represent different groups.

More about Normal Probability Plots and more about interpreting these plots from the glossary

More about Box Plots
Fewer than 4 non-HSB case data were entered. No statistical analysis has been attempted.

Calculate Correlations

Sample r
Literature r
Tissue r

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Pearson Spearman Rank

The Sample Correlation is computed between trait data and any
other traits in the sample database selected above. Use Spearman Rank
when the sample size is small (<20) or when there are influential outliers.
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The Literature Correlation (Lit r) between this gene and all other genes is computed
using the Semantic Gene Organizer and human, rat, and mouse data from PubMed.
Values are ranked by Lit r, but Sample r and Tissue r are also displayed.

More on using Lit r
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Samples:

Pearson Spearman Rank

The Tissue Correlation (Tissue r) estimates the similarity of expression of two genes
or transcripts across different cells, tissues, or organs (glossary). Tissue correlations
are generated by analyzing expression in multiple samples usually taken from single cases.
Pearson and Spearman Rank correlations have been computed for all pairs of genes
using data from mouse samples.

Mapping Tools

Mapping options are disabled for data not matched with genotypes.

Review and Edit Data

Edit or delete values in the Trait Data boxes, and use the Reset option as needed.
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  Outliers highlighted in yellow can be hidden using the Hide Outliers button,
  and samples with no value (x) can be hidden by clicking Hide No Value .

Index Sample Value SE Tissue Sex Age Ethn. PMI (hrs) pH
1 HSB92 ± VFC M 5.25 H 4 6.65
2 HSB96 ± VFC M 4 H 2 n/a
3 HSB97 ± VFC F 4.25 CC 1 n/a
4 HSB98 ± VFC F 4.75 H 2 n/a
5 HSB99 ± VFC F 5.25 A 2 n/a
6 HSB100 ± VFC F 4.75 AA 4 6.56
7 HSB102 ± VFC F 5.25 CC 13 5.89
8 HSB103 ± VFC M 3.25 E 1.5 n/a
9 HSB104 ±
10 HSB105 ± VFC M 216 CC 28 6.21
11 HSB106 ± VFC M 768 CC 4 6.31
12 HSB107 ± VFC F 5.25 n/a 20 6.61
13 HSB111 ± VFC F 840 CC 13 6.63
14 HSB112 ± VFC M 2 E 5 6.94
15 HSB113 ± VFC F 3 A/E 4 6.92
16 HSB114 ± VFC M 3.25 E 1 n/a
17 HSB118 ± VFC M 48 AA 20 6.52
18 HSB119 ± VFC M 180 AA 14.5 6.93
19 HSB121 ± VFC M 13 CC 9.5 6.26
20 HSB122 ± VFC F 12 CC 18 6.68
21 HSB123 ± VFC M 444 AA 13 6.37
22 HSB124 ± VFC F 156 AA 19.5 6.34
23 HSB125 ±
24 HSB126 ± VFC F 360 CC 9.5 6.92
25 HSB127 ± VFC F 228 CC 9.5 5.91
26 HSB130 ± VFC F 252 AA 18 6.81
27 HSB131 ± VFC F 15 CC 26 6.26
28 HSB132 ± VFC M 13 CC 22 6.6
29 HSB133 ±
30 HSB135 ± VFC F 480 AA 30.5 6.82
31 HSB136 ± VFC M 276 AA 10.5 6.36
32 HSB139 ± VFC M 13 AA 20 6.7
33 HSB141 ± VFC M 96 AA 30 6.54
34 HSB142 ± VFC M 264 CC 18 6.69
35 HSB143 ± VFC F 24 CC 12 6.3
36 HSB144 ± VFC M 480 AA 28 6.27
37 HSB145 ± VFC M 432 CC 18 n/a
38 HSB148 ±
39 HSB149 ± VFC F 3.25 E 2 6.39
40 HSB150 ± VFC F 3 A 2.33 6.08
41 HSB153 ± VFC F 3 As 3 n/a
42 HSB154 ± VFC M 4 CC 1 6.44
43 HSB155 ± VFC F 8.75 CC 13 6.67
44 HSB156 ± VFC F 984 CC 16 5.68
45 HSB159 ± VFC M 5.5 CC 2 6.58
46 HSB169 ±
47 HSB171 ± VFC M 19 AA 18 5.96
48 HSB172 ± VFC M 36 H 16 5.69
49 HSB173 ± VFC F 36 CC 8 6.03
50 HSB174 ± VFC M 96 AA 16 6.25
51 HSB175 ± VFC F 132 AA 22 6.7
52 HSB178 ± VFC M 4 n/a 3 6.84
53 HSB182 ± VFC M 660 CC 13 6.55
54 HSB183 ± VFC M 504 CC 19 6.52
55 HSB185 ±
56 HSB187 ± VFC F 444 H 10 6.03

Index Sample Value SE Tissue Sex Age Ethn. PMI (hrs) pH
1 HSB194 ± VFC M 9.25 CC 20 n/a

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