Details and Links

Gene Symbol:		Chrna3
Aliases:		(a)3; A730007P14Rik; Acra-3; Acra3; LNCR2; PAOD2; MGC104879; CHRNA3
Description:		cholinergic receptor, nicotinic, alpha polypeptide 3; last two exons and proximal 3' UTR
Location:		Chr 9 @ 55.012583 Mb on the minus strand
Target Score:		BLAT specificity: 11.7   Score: 233
Species and Group:		Mouse, NZBXFVB-N2
Database 3:		NCI Mammary M430v2 (Apr09) RMA
Resource Links:		Gene  OMIM  UniGene  GenBank  HomoloGene
		UCSC  BioGPS  STRING  PANTHER  Gemma  ABA  EBI GWAS  Wiki-Pi

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  Basic Statistics

Include: All Cases NZBXFVB-N2 Only Non-NZBXFVB-N2 Only    

Basic Table Probability Plot Bar Graph (by name) Bar Graph (by rank) Box Plot Statistic Value N of Samples 66 Mean 7.103 Median 7.105 Standard Error (SE) 0.021 Standard Deviation (SD) 0.169 Minimum 6.727 Maximum 7.678 Range (log2) 0.951 Range (fold) 1.933 Interquartile Range 1.157 This plot evaluates whether data are normally distributed. Different symbols represent different groups. More about Normal Probability Plots and more about interpreting these plots from the glossary More about Box Plots Basic Table Probability Plot Bar Graph (by name) Bar Graph (by rank) Box Plot Statistic Value N of Samples 65 Mean 7.104 Median 7.110 Standard Error (SE) 0.021 Standard Deviation (SD) 0.170 Minimum 6.727 Maximum 7.678 Range (log2) 0.951 Range (fold) 1.933 Interquartile Range 1.166 This plot evaluates whether data are normally distributed. Different symbols represent different groups. More about Normal Probability Plots and more about interpreting these plots from the glossary More about Box Plots Fewer than 4 non-NZBXFVB-N2 case data were entered. No statistical analysis has been attempted.

  Calculate Correlations

Sample r Literature r Tissue r Database: NZBXFVB-N2 Published Phenotypes NCI Mammary M430v2 (Apr09) RMA Return: top 25 top 50 top 100 top 200 top 500 top 1000 top 2000 top 5000 top 10000 top 15000 top 20000 top 30000 top 40000 top 60000 Samples: NZBXFVB-N2 Only Non-NZBXFVB-N2 Only All Cases Pearson    Spearman Rank The Sample Correlation is computed between trait data and any other traits in the sample database selected above. Use Spearman Rank when the sample size is small (<20) or when there are influential outliers. Database: NZBXFVB-N2 Published Phenotypes NCI Mammary M430v2 (Apr09) RMA Return: top 25 top 50 top 100 top 200 top 500 top 1000 top 2000 top 5000 top 10000 top 15000 top 20000 top 30000 top 40000 top 60000 Samples: NZBXFVB-N2 Only Non-NZBXFVB-N2 Only All Cases The Literature Correlation (Lit r) between this gene and all other genes is computed using the Semantic Gene Organizer and human, rat, and mouse data from PubMed. Values are ranked by Lit r, but Sample r and Tissue r are also displayed. More on using Lit r Database: NZBXFVB-N2 Published Phenotypes NCI Mammary M430v2 (Apr09) RMA Return: top 25 top 50 top 100 top 200 top 500 top 1000 top 2000 top 5000 top 10000 top 15000 top 20000 top 30000 top 40000 top 60000 Samples: NZBXFVB-N2 Only Non-NZBXFVB-N2 Only All Cases Pearson    Spearman Rank The Tissue Correlation (Tissue r) estimates the similarity of expression of two genes or transcripts across different cells, tissues, or organs (glossary). Tissue correlations are generated by analyzing expression in multiple samples usually taken from single cases. Pearson and Spearman Rank correlations have been computed for all pairs of genes using data from mouse samples.

  Mapping Tools

Interval Marker Regression Composite Pair-Scan Chromosome: All 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 Mapping Scale: Megabase Centimorgan Permutations: Bootstrap Test (n=2000) Use Parents Use Weighted Interval Mapping computes linkage maps for the entire genome or single chromosomes. The Permutation Test estimates suggestive and significant linkage scores. The Bootstrap Test estimates the precision of the QTL location. Display LRS above: Permutations: Display all LRS Use Parents Use Weighted Marker regression computes and displays LRS values for individual markers. This function also lists additive effects (phenotype units per allele) and dominance deviations for some datasets. Chromosome: All 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 Mapping Scale: Megabase Centimorgan Control Locus: Permutations: Bootstrap Test (n=2000) Use Parents Composite Interval Mapping allows you to control for a single marker as a cofactor. To find a control marker, run the Marker Regression function. Sort by: LRS Full LRS Interact Return: top 50 top 100 top 200 top 500 Permutation Test (n=500) Pair-Scan searches for pairs of chromosomal regions that are involved in two-locus epistatic interactions.

  Review and Edit Data

Edit or delete values in the Trait Data boxes, and use the Reset option as needed.   Block samples by index:         NZBXFVB-N2 Only Non-NZBXFVB-N2 Only       Options:                          Outliers highlighted in  yellow  can be hidden using the Hide Outliers button,   and samples with no value (x) can be hidden by clicking Hide No Value . Index Sample Value 1 NZB2421 2 NZB2424 3 NZB2426 4 NZB2703 5 NZB3001 6 NZB3004 7 NZB3039 8 NZB3042 9 NZB3046 10 NZB3047 11 NZB3053 12 NZB3197 13 NZB3199 14 NZB3289 15 NZB3290 16 NZB3291 17 NZB3295 18 NZB3296 19 NZB3299 20 NZB3351 21 NZB3353 22 NZB3355 23 NZB3394 24 NZB3397 25 NZB3546 26 NZB3547 27 NZB3548 28 NZB3550 29 NZB3551 30 NZB3567 31 NZB3568 32 NZB3569 33 NZB3570 34 NZB3572 35 NZB3738 36 NZB3739 37 NZB3769 38 NZB3824 39 NZB3825 40 NZB3827 41 NZB3830 42 NZB3852 43 NZB3853 44 NZB3854 45 NZB3855 46 NZB3864 47 NZB3867 48 NZB3868 49 NZB3890 50 NZB3891 51 NZB4946 52 NZB4950 53 NZB4955 54 NZB4956 55 NZB4957 56 NZB4958 57 NZB4960 58 NZB4963 59 NZB4964 60 NZB4966 61 NZB4967 62 NZB4971 63 NZB4973 64 NZB4974 65 NZB4975 66 NZB4977 67 NZB4978 68 NZB4979 69 NZB4980 70 NZB5000   Index Sample Value 1 NZB5000