Details and Links

Gene Symbol:		Chrna3
Aliases:		(a)3; A730007P14Rik; Acra-3; Acra3; MGC104879
Description:		cholinergic receptor, nicotinic, alpha polypeptide 3; far 3' UTR
Location:		Chr 9 @ 55.010354 Mb on the minus strand
Target Score:		BLAT specificity: 5.0   Score: 50
Species and Group:		Mouse, HS-CC
Database 3:		OHSU HS-CC Striatum ILM6v1 (Feb11) RankInv
Resource Links:		Gene  OMIM  UniGene  GenBank  HomoloGene
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  Basic Statistics

Include: All Cases HS-CC Only Non-HS-CC Only    

Basic Table Probability Plot Bar Graph (by name) Bar Graph (by rank) Box Plot Statistic Value N of Samples 90 Mean 6.866 Median 6.867 Standard Error (SE) 0.009 Standard Deviation (SD) 0.082 Minimum 6.635 Maximum 7.034 Range (log2) 0.399 Range (fold) 1.319 Interquartile Range 1.081 This plot evaluates whether data are normally distributed. Different symbols represent different groups. More about Normal Probability Plots and more about interpreting these plots from the glossary More about Box Plots Basic Table Probability Plot Bar Graph (by name) Bar Graph (by rank) Box Plot Statistic Value N of Samples 89 Mean 6.866 Median 6.866 Standard Error (SE) 0.009 Standard Deviation (SD) 0.082 Minimum 6.635 Maximum 7.034 Range (log2) 0.399 Range (fold) 1.319 Interquartile Range 1.081 This plot evaluates whether data are normally distributed. Different symbols represent different groups. More about Normal Probability Plots and more about interpreting these plots from the glossary More about Box Plots Fewer than 4 non-HS-CC case data were entered. No statistical analysis has been attempted.

  Calculate Correlations

Sample r Literature r Tissue r Database: OHSU HS-CC Striatum ILM6v1 (Feb11) RankInv Return: top 25 top 50 top 100 top 200 top 500 top 1000 top 2000 top 5000 top 10000 top 15000 top 20000 top 30000 top 40000 top 60000 Samples: HS-CC Only Non-HS-CC Only All Cases Pearson    Spearman Rank The Sample Correlation is computed between trait data and any other traits in the sample database selected above. Use Spearman Rank when the sample size is small (<20) or when there are influential outliers. Database: OHSU HS-CC Striatum ILM6v1 (Feb11) RankInv Return: top 25 top 50 top 100 top 200 top 500 top 1000 top 2000 top 5000 top 10000 top 15000 top 20000 top 30000 top 40000 top 60000 Samples: HS-CC Only Non-HS-CC Only All Cases The Literature Correlation (Lit r) between this gene and all other genes is computed using the Semantic Gene Organizer and human, rat, and mouse data from PubMed. Values are ranked by Lit r, but Sample r and Tissue r are also displayed. More on using Lit r Database: OHSU HS-CC Striatum ILM6v1 (Feb11) RankInv Return: top 25 top 50 top 100 top 200 top 500 top 1000 top 2000 top 5000 top 10000 top 15000 top 20000 top 30000 top 40000 top 60000 Samples: HS-CC Only Non-HS-CC Only All Cases Pearson    Spearman Rank The Tissue Correlation (Tissue r) estimates the similarity of expression of two genes or transcripts across different cells, tissues, or organs (glossary). Tissue correlations are generated by analyzing expression in multiple samples usually taken from single cases. Pearson and Spearman Rank correlations have been computed for all pairs of genes using data from mouse samples.

  Mapping Tools

Mapping options are disabled for data not matched with genotypes.

  Review and Edit Data

Edit or delete values in the Trait Data boxes, and use the Reset option as needed.   Block samples by index:         HS-CC Only Non-HS-CC Only       Options:                          Outliers highlighted in  yellow  can be hidden using the Hide Outliers button,   and samples with no value (x) can be hidden by clicking Hide No Value . Index Sample Value 1 HSCC01M 2 HSCC02M 3 HSCC03M 4 HSCC04M 5 HSCC05M 6 HSCC06M 7 HSCC07M 8 HSCC08M 9 HSCC10M 10 HSCC12M 11 HSCC14M 12 HSCC15M 13 HSCC16M 14 HSCC17M 15 HSCC18M 16 HSCC19M 17 HSCC20M 18 HSCC21M 19 HSCC22M 20 HSCC23M 21 HSCC24M 22 HSCC25M 23 HSCC26M 24 HSCC27M 25 HSCC28M 26 HSCC29M 27 HSCC30M 28 HSCC31M 29 HSCC32M 30 HSCC33M 31 HSCC34M 32 HSCC35M 33 HSCC36M 34 HSCC37F 35 HSCC38F 36 HSCC39F 37 HSCC40F 38 HSCC41F 39 HSCC42F 40 HSCC44F 41 HSCC45F 42 HSCC46F 43 HSCC47F 44 HSCC48F 45 HSCC49F 46 HSCC50F 47 HSCC51F 48 HSCC52F 49 HSCC53F 50 HSCC54F 51 HSCC55F 52 HSCC56F 53 HSCC57F 54 HSCC58F 55 HSCC59F 56 HSCC60M 57 HSCC61M 58 HSCC62M 59 HSCC63F 60 HSCC64F 61 HSCC65F 62 HSCC66F 63 HSCC67F 64 HSCC68F 65 HSCC69F 66 HSCC70F 67 HSCC71F 68 HSCC72F 69 HSCC73F 70 HSCC74F 71 HSCC75F 72 HSCC76M 73 HSCC77M 74 HSCC78F 75 HSCC79F 76 HSCC80F 77 HSCC81F 78 HSCC82F 79 HSCC83F 80 HSCC84M 81 HSCC85M 82 HSCC86M 83 HSCC87M 84 HSCC88M 85 HSCC89M 86 HSCC90M 87 HSCC91F 88 HSCC92F 89 HSCC94F 90 HSCC95F   Index Sample Value 1 HSCC95F