Details and Links

Gene Symbol:		Chrna3
Aliases:		(a)3; A730007P14Rik; Acra-3; Acra3; MGC104879
Description:		cholinergic receptor, nicotinic, alpha polypeptide 3; far 3' UTR
Location:		Chr 9 @ 55.010354 Mb on the minus strand
Target Score:		BLAT specificity: 5.0   Score: 50
Species and Group:		Mouse, HS
Database 3:		OX UK HS ILM6v1.1 Liver (May 2010) RankInv
Resource Links:		Gene  OMIM  UniGene  GenBank  HomoloGene
		UCSC  BioGPS  STRING  PANTHER  Gemma  ABA  EBI GWAS  Wiki-Pi

Add	Find	Verify	GeneWiki	SNPs

  Basic Statistics

Include: All Cases HS Only Non-HS Only    

Basic Table Probability Plot Bar Graph (by name) Bar Graph (by rank) Box Plot Statistic Value N of Samples 261 Mean 6.798 Median 6.832 Standard Error (SE) 0.015 Standard Deviation (SD) 0.247 Minimum 5.577 Maximum 7.481 Range (log2) 1.904 Range (fold) 3.742 Interquartile Range 1.240 This plot evaluates whether data are normally distributed. Different symbols represent different groups. More about Normal Probability Plots and more about interpreting these plots from the glossary More about Box Plots Basic Table Probability Plot Bar Graph (by name) Bar Graph (by rank) Box Plot Statistic Value N of Samples 260 Mean 6.799 Median 6.832 Standard Error (SE) 0.015 Standard Deviation (SD) 0.247 Minimum 5.577 Maximum 7.481 Range (log2) 1.904 Range (fold) 3.742 Interquartile Range 1.240 This plot evaluates whether data are normally distributed. Different symbols represent different groups. More about Normal Probability Plots and more about interpreting these plots from the glossary More about Box Plots Fewer than 4 non-HS case data were entered. No statistical analysis has been attempted.

  Calculate Correlations

Sample r Literature r Tissue r Database: Heterogeneous Stock Phenotypes OX UK HS ILM6v1.1 Hippocampus (May 2010) RankInv OX UK HS ILM6v1.1 Liver (May 2010) RankInv OX UK HS ILM6v1.1 Lung (May 2010) RankInv Return: top 25 top 50 top 100 top 200 top 500 top 1000 top 2000 top 5000 top 10000 top 15000 top 20000 top 30000 top 40000 top 60000 Samples: HS Only Non-HS Only All Cases Pearson    Spearman Rank The Sample Correlation is computed between trait data and any other traits in the sample database selected above. Use Spearman Rank when the sample size is small (<20) or when there are influential outliers. Database: Heterogeneous Stock Phenotypes OX UK HS ILM6v1.1 Hippocampus (May 2010) RankInv OX UK HS ILM6v1.1 Liver (May 2010) RankInv OX UK HS ILM6v1.1 Lung (May 2010) RankInv Return: top 25 top 50 top 100 top 200 top 500 top 1000 top 2000 top 5000 top 10000 top 15000 top 20000 top 30000 top 40000 top 60000 Samples: HS Only Non-HS Only All Cases The Literature Correlation (Lit r) between this gene and all other genes is computed using the Semantic Gene Organizer and human, rat, and mouse data from PubMed. Values are ranked by Lit r, but Sample r and Tissue r are also displayed. More on using Lit r Database: Heterogeneous Stock Phenotypes OX UK HS ILM6v1.1 Hippocampus (May 2010) RankInv OX UK HS ILM6v1.1 Liver (May 2010) RankInv OX UK HS ILM6v1.1 Lung (May 2010) RankInv Return: top 25 top 50 top 100 top 200 top 500 top 1000 top 2000 top 5000 top 10000 top 15000 top 20000 top 30000 top 40000 top 60000 Samples: HS Only Non-HS Only All Cases Pearson    Spearman Rank The Tissue Correlation (Tissue r) estimates the similarity of expression of two genes or transcripts across different cells, tissues, or organs (glossary). Tissue correlations are generated by analyzing expression in multiple samples usually taken from single cases. Pearson and Spearman Rank correlations have been computed for all pairs of genes using data from mouse samples.

  Mapping Tools

Mapping options are disabled for data not matched with genotypes.

  Review and Edit Data

Edit or delete values in the Trait Data boxes, and use the Reset option as needed.   Block samples by index:         HS Only Non-HS Only       Options:                          Outliers highlighted in  yellow  can be hidden using the Hide Outliers button,   and samples with no value (x) can be hidden by clicking Hide No Value . Index Sample Value 1 A048010273 2 A048011040 3 A048011287 4 A048013559 5 A048021023 6 A048030369 7 A048031794 8 A048032099 9 A048035543 10 A048035776 11 A048041606 12 A048044830 13 A048045845 14 A048050833 15 A048052595 16 A048053821 17 A048054885 18 A048056786 19 A048057565 20 A048057823 21 A048058070 22 A048058878 23 A048059117 24 A048067529 25 A048068077 26 A048070376 27 A048072087 28 A048072266 29 A048073606 30 A048073633 31 A048075265 32 A048075614 33 A048076630 34 A048080339 35 A048085283 36 A048086093 37 A048086841 38 A048092264 39 A048092534 40 A048092536 41 A048093042 42 A048094867 43 A048098790 44 A048101850 45 A048102058 46 A048102298 47 A048103552 48 A048105840 49 A048109836 50 A048113040 51 A048115586 52 A048115873 53 A048117780 54 A048119797 55 A048120064 56 A048120298 57 A048122322 58 A048125017 59 A048258842 60 A048261040 61 A048263023 62 A048268784 63 A048272639 64 A048273083 65 A048273786 66 A048274015 67 A048274273 68 A048275274 69 A048275888 70 A048276563 71 A048276590 72 A048276871 73 A048277066 74 A048277878 75 A048277888 76 A048278380 77 A048278795 78 A048279009 79 A048279281 80 A048280355 81 A048280513 82 A048281589 83 A048281772 84 A048281893 85 A048282019 86 A048282069 87 A048283353 88 A048283514 89 A048285264 90 A048285543 91 A048286078 92 A048287013 93 A048287563 94 A048287855 95 A048288313 96 A048292860 97 A048295302 98 A048296850 99 A048297050 100 A048297770 101 A048300274 102 A048300286 103 A048301370 104 A048301565 105 A048302801 106 A048303261 107 A052552092 108 A052569537 109 A052624514 110 A052629363 111 A052787883 112 A052799328 113 A052801541 114 A052808283 115 A052849123 116 A052853802 117 A052857857 118 A052888127 119 A052893788 120 A053027117 121 A053035844 122 A053037776 123 A053042270 124 A053054340 125 A053078842 126 A053083044 127 A053102110 128 A053107519 129 A053112576 130 A053117273 131 A053118815 132 A053268028 133 A053274515 134 A053311315 135 A053315089 136 A053347109 137 A053363287 138 A053366615 139 A053381362 140 A053512777 141 A053517124 142 A053524010 143 A053564582 144 A053565037 145 A053607343 146 A053607586 147 A053611080 148 A053611854 149 A053613021 150 A053615533 151 A053617622 152 A053622625 153 A053625512 154 A053625622 155 A053627600 156 A053627847 157 A053627872 158 A053628616 159 A053777555 160 A053790005 161 A053796333 162 A053811085 163 A053819563 164 A054091270 165 A062882537 166 A062882891 167 A063004568 168 A063004831 169 A063010041 170 A063011268 171 A063014272 172 A063127584 173 A063260315 174 A063263382 175 A063265847 176 A063266797 177 A063268335 178 A063310029 179 A063312867 180 A063336815 181 A063338625 182 A063341852 183 A063342341 184 A063344541 185 A063353878 186 A063357294 187 A063357846 188 A063359003 189 A063359884 190 A063360058 191 A063367095 192 A063368083 193 A063369379 194 A063371075 195 A063373814 196 A063375825 197 A063379267 198 A063383025 199 A063383811 200 A063514300 201 A063515074 202 A063516577 203 A063516780 204 A063518610 205 A063519591 206 A063521602 207 A063521838 208 A063527856 209 A063529600 210 A063531580 211 A063534561 212 A063535101 213 A063538058 214 A063543090 215 A063545824 216 A063546872 217 A063547877 218 A063549863 219 A063551369 220 A063554022 221 A063556563 222 A063557808 223 A063568001 224 A063572073 225 A063572633 226 A063573313 227 A063573561 228 A063575342 229 A063584892 230 A063600005 231 A063604338 232 A063604629 233 A063604816 234 A063604845 235 A063608034 236 A063610105 237 A063610516 238 A063610617 239 A063611041 240 A063612773 241 A063614772 242 A063618351 243 A063619274 244 A063623891 245 A063630607 246 A063768269 247 A063772352 248 A063772894 249 A063773299 250 A063773367 251 A063779838 252 A063795281 253 A063796366 254 A063798078 255 A063804552 256 A063818533 257 A063820850 258 A063834324 259 A063842855 260 A063854023 261 A063855885 262 A063856573 263 A063859291 264 A063860035 265 A063860103 266 A063876111 267 A063888627 268 A063893087 269 A064003784 270 A064005323 271 A064011272 272 A064014880 273 A064017081 274 A064018793 275 A064018874 276 A064028563 277 A064033524 278 A064035552 279 A064037307 280 A064038309 281 A064038874 282 A064043567 283 A064048791 284 A064049623 285 A064051078 286 A064052345 287 A064055293 288 A064056577 289 A064065775 290 A064066630 291 A064076342 292 A064080116 293 A064082565 294 A064084004 295 A064087887 296 A064096096 297 A064098032 298 A064099868 299 A064100014 300 A064610602 301 A064768831 302 A066785804 303 A066789044 304 A066807536 305 A066807555 306 A066809799 307 A066819768 308 A066825315 309 A066825380 310 A066825627 311 A066851861 312 A066853001 313 A066861069 314 A066861843 315 A066867291 316 A066868872 317 A066880257 318 A066882524 319 A066883637 320 A066886589 321 A066889358 322 A066889543 323 A066891127 324 A066891591 325 A066892518 326 A066893123 327 A067004612 328 A067005820 329 A067011052 330 A067013857 331 A067014002 332 A067018569 333 A067021522 334 A067025100 335 A067026018 336 A067027301 337 A067035071 338 A067039304 339 A067042073 340 A067044113 341 A067054621 342 A067058793 343 A067063288 344 A067063313 345 A067073289 346 A067079580 347 A067081094 348 A067085307 349 A067089542 350 A067093029 351 A067094078 352 A067095101 353 A067099022 354 A067099841 355 A067109771 356 A067111287 357 A067118890 358 A067120600 359 A067121769 360 A067257117 361 A067259618 362 A067259785 363 A067266284 364 A067276121 365 A067278534 366 A067281259 367 A067292638 368 A067292795 369 A067293358 370 A067296011 371 A067296099 372 A067296859 373 A067298816 374 A067299835 375 A067300011 376 A067301357 377 A067301560 378 A067301616 379 A067301776 380 A067302041 381 A067303053 382 A067303587 383 A067304542 384 A067304848 385 A067305333 386 A067305352 387 A067306302 388 A067306338 389 A067306375 390 A067306573 391 A067306625 392 A067306626 393 A067306825 394 A067307590 395 A067308813 396 A067309526 397 A067310570 398 A067311866 399 A067313019 400 A067316112 401 A067317335 402 A067320280 403 A067320288 404 A067320841 405 A067320889 406 A083559041 407 A083583091 408 A083611550 409 A084121087 410 A084124115 411 A084124302 412 A084125015 413 A084125270 414 A084125374 415 A084125523 416 A084125534 417 A084125547 418 A084126009 419 A084126106 420 A084126126 421 A084126374 422 A084126577 423 A084126638 424 A084126773 425 A084126850 426 A084127009 427 A084127010 428 A084127030 429 A084127047 430 A084127055 431 A084127065 432 A084127091 433 A084127102 434 A084127110 435 A084127121 436 A084127286 437 A084127585 438 A084270578 439 A084270587 440 A084270590 441 A084270774 442 A084270895 443 A084271009 444 A084271063 445 A084271292 446 A084271369 447 A084271372 448 A084271571 449 A084271615 450 A084279514 451 A084279523 452 A084279591 453 A084280034 454 A084280574 455 A084280601 456 A084280830 457 A084282637 458 A084284329 459 A084284539 460 A084284540 461 A084284566 462 A084284577 463 A084284635 464 A084284769 465 A084284823 466 A084284842 467 A084284848 468 A084285035 469 A084285109 470 A084285310 471 A084285341 472 A084285587 473 A084285786 474 A084285820 475 A084285850 476 A084285868 477 A084286106 478 A084286127 479 A084286378 480 A084286518 481 A084286521 482 A084286550 483 A084286598 484 A084286625 485 A084286629 486 A084286771 487 A084286862 488 A084286867 489 A084286879 490 A084287053 491 A084287257 492 A084287315 493 A084287365 494 A084287516 495 A084287630 496 A084287792 497 A084289020 498 A084290318 499 A084290360 500 A084290531 501 A084290788 502 A084291352 503 A084291356 504 A084291611 505 A084291618 506 A084291628 507 A084291785 508 A084291787 509 A084292044   Index Sample Value 1 A084292044