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Trait Data and Analysis  for Record ID 4993117

  Details and Links

Gene Symbol: Chrna3
Aliases: (a)3; A730007P14Rik; Acra-3; Acra3; MGC104879
Description: cholinergic receptor, nicotinic, alpha polypeptide 3; intron 1
Location: Chr 9 @ 55.024491 Mb on the minus strand
Target Score: BLAT specificity: 1.0   Score: 54  
Species and Group: Mouse, BXD
Database 3: HQF Striatum Affy Mouse Exon 1.0ST Exon Level (Dec09) RMA
Resource Links: Gene  OMIM  UniGene  HomoloGene  
UCSC  BioGPS  STRING  PANTHER  Gemma  ABA  EBI GWAS  Wiki-Pi  

Add To Collection Find similar expression data  Check probe locations at UCSC  Write or review comments about this gene  View SNPs and Indels  Check sequence of probes
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  Basic Statistics

Include:



StatisticValue
N of Samples49
Mean8.826
Median8.823
Standard Error (SE)0.033
Standard Deviation (SD)0.230
Minimum8.356
Maximum9.236
Range (log2)0.880
Range (fold)1.840
Interquartile Range1.337

nP_ESvIBAA9.gif


This plot evaluates whether data are normally distributed. Different symbols represent different groups.

More about Normal Probability Plots and more about interpreting these plots from the glossary

Box_8l2ihfrE.gif

More about Box Plots

Bar_jT0kzcyP.gif

Bar_qF9KZfKl.gif

StatisticValue
N of Samples32
Mean8.796
Median8.815
Standard Error (SE)0.038
Standard Deviation (SD)0.218
Minimum8.356
Maximum9.146
Range (log2)0.789
Range (fold)1.728
Interquartile Range1.233

nP_3fPGKsbW.gif


This plot evaluates whether data are normally distributed. Different symbols represent different groups.

More about Normal Probability Plots and more about interpreting these plots from the glossary

Box_tMaIbOyQ.gif

More about Box Plots

Bar_UOWZJD4q.gif

Bar_aOn9bqRA.gif

StatisticValue
N of Samples20
Mean8.865
Median8.794
Standard Error (SE)0.057
Standard Deviation (SD)0.254
Minimum8.553
Maximum9.236
Range (log2)0.683
Range (fold)1.606
Interquartile Range1.416

nP_SaYX4xpT.gif


This plot evaluates whether data are normally distributed. Different symbols represent different groups.

More about Normal Probability Plots and more about interpreting these plots from the glossary

Box_aLr2o7Z3.gif

More about Box Plots

Bar_cozQWqde.gif

Bar_2UoCb55Z.gif

  Calculate Correlations

Database:
Return:
Samples:

Pearson    Spearman Rank



The Sample Correlation is computed between trait data and any
other traits in the sample database selected above. Use Spearman Rank
when the sample size is small (<20) or when there are influential outliers.
Database:
Return:
Samples:



The Literature Correlation (Lit r) between this gene and all other genes is computed
using the Semantic Gene Organizer and human, rat, and mouse data from PubMed.
Values are ranked by Lit r, but Sample r and Tissue r are also displayed.

More on using Lit r
Database:
Return:
Samples:

Pearson    Spearman Rank



The Tissue Correlation (Tissue r) estimates the similarity of expression of two genes
or transcripts across different cells, tissues, or organs (glossary). Tissue correlations
are generated by analyzing expression in multiple samples usually taken from single cases.
Pearson and Spearman Rank correlations have been computed for all pairs of genes
using data from mouse samples.

  Mapping Tools

Chromosome:
Mapping Scale:
Permutations:

Bootstrap Test (n=2000)
Use Parents
Use Weighted



Interval Mapping computes linkage maps for the entire genome or single
chromosomes. The Permutation Test estimates suggestive and significant
linkage scores. The Bootstrap Test estimates the precision of the QTL location.

Display LRS above:
Permutations:

Display all LRS
Use Parents
Use Weighted



Marker regression computes and displays LRS values for individual markers.
This function also lists additive effects (phenotype units per allele) and
dominance deviations for some datasets.

Chromosome:
Mapping Scale:
Control Locus:
Permutations:

Bootstrap Test (n=2000)
Use Parents



Composite Interval Mapping allows you to control for a single marker as
a cofactor. To find a control marker, run the Marker Regression function.

Sort by:
Return:

Permutation Test (n=500)



Pair-Scan searches for pairs of chromosomal regions that are
involved in two-locus epistatic interactions.

  Review and Edit Data

Edit or delete values in the Trait Data boxes, and use the Reset option as needed.

  Block samples by index:            
  Options:                       


  Outliers highlighted in  yellow  can be hidden using the Hide Outliers button,
  and samples with no value (x) can be hidden by clicking Hide No Value .


IndexSampleValue SE
1 B6D2F1 ±
2 D2B6F1 ±
3 C57BL/6J ±
4 DBA/2J ±
5 BXD1 ±
6 BXD2 ±
7 BXD5 ±
8 BXD6 ±
9 BXD8 ±
10 BXD9 ±
11 BXD11 ±
12 BXD12 ±
13 BXD13 ±
14 BXD14 ±
15 BXD15 ±
16 BXD16 ±
17 BXD18 ±
18 BXD19 ±
19 BXD20 ±
20 BXD21 ±
21 BXD22 ±
22 BXD23 ±
23 BXD24 ±
24 BXD24a ±
25 BXD25 ±
26 BXD27 ±
27 BXD28 ±
28 BXD29 ±
29 BXD30 ±
30 BXD31 ±
31 BXD32 ±
32 BXD33 ±
33 BXD34 ±
34 BXD35 ±
35 BXD36 ±
36 BXD37 ±
37 BXD38 ±
38 BXD39 ±
39 BXD40 ±
40 BXD41 ±
41 BXD42 ±
42 BXD43 ±
43 BXD44 ±
44 BXD45 ±
45 BXD48 ±
46 BXD48a (BXD96) ±
47 BXD49 ±
48 BXD50 ±
49 BXD51 ±
50 BXD52 ±
51 BXD53 ±
52 BXD54 ±
53 BXD55 ±
54 BXD56 ±
55 BXD59 ±
56 BXD60 ±
57 BXD61 ±
58 BXD62 ±
59 BXD63 ±
60 BXD64 ±
61 BXD65 ±
62 BXD65a (BXD97) ±
63 BXD65b (BXD92) ±
64 BXD66 ±
65 BXD67 ±
66 BXD68 ±
67 BXD69 ±
68 BXD70 ±
69 BXD71 ±
70 BXD72 ±
71 BXD73 ±
72 BXD73a (BXD80) ±
73 BXD73b (BXD103) ±
74 BXD74 ±
75 BXD75 ±
76 BXD76 ±
77 BXD77 ±
78 BXD78 ±
79 BXD79 ±
80 BXD81 ±
81 BXD83 ±
82 BXD84 ±
83 BXD85 ±
84 BXD86 ±
85 BXD87 ±
86 BXD88 ±
87 BXD89 ±
88 BXD90 ±
89 BXD91 ±
90 BXD93 ±
91 BXD94 ±
92 BXD95 ±
93 BXD98 ±
94 BXD99 ±
95 BXD100 ±
96 BXD101 ±
97 BXD102 ±
98 BXD104 ±
99 BXD105 ±
100 BXD106 ±
101 BXD107 ±
102 BXD108 ±
103 BXD109 ±
104 BXD110 ±
105 BXD111 ±
106 BXD112 ±
107 BXD113 ±
108 BXD114 ±
109 BXD115 ±
110 BXD116 ±
111 BXD117 ±
112 BXD119 ±
113 BXD120 ±
114 BXD121 ±
115 BXD122 ±
116 BXD123 ±
117 BXD124 ±
118 BXD125 ±
119 BXD126 ±
120 BXD127 ±
121 BXD128 ±
122 BXD128a ±
123 BXD130 ±
124 BXD131 ±
125 BXD132 ±
126 BXD133 ±
127 BXD134 ±
128 BXD135 ±
129 BXD136 ±
130 BXD137 ±
131 BXD138 ±
132 BXD139 ±
133 BXD141 ±
134 BXD142 ±
135 BXD144 ±
136 BXD145 ±
137 BXD146 ±
138 BXD147 ±
139 BXD148 ±
140 BXD149 ±
141 BXD150 ±
142 BXD151 ±
143 BXD152 ±
144 BXD153 ±
145 BXD154 ±
146 BXD155 ±
147 BXD156 ±
148 BXD157 ±
149 BXD160 ±
150 BXD161 ±
151 BXD162 ±
152 BXD165 ±
153 BXD168 ±
154 BXD169 ±
155 BXD170 ±
156 BXD171 ±
157 BXD172 ±
158 BXD173 ±
159 BXD174 ±
160 BXD175 ±
161 BXD176 ±
162 BXD177 ±
163 BXD178 ±
164 BXD180 ±
165 BXD181 ±
166 BXD183 ±
167 BXD184 ±
168 BXD186 ±
169 BXD187 ±
170 BXD188 ±
171 BXD189 ±
172 BXD190 ±
173 BXD191 ±
174 BXD192 ±
175 BXD193 ±
176 BXD194 ±
177 BXD195 ±
178 BXD196 ±
179 BXD197 ±
180 BXD198 ±
181 BXD199 ±
182 BXD200 ±
183 BXD201 ±
184 BXD202 ±
185 BXD203 ±
186 BXD204 ±
187 BXD205 ±
188 BXD206 ±
189 BXD207 ±
190 BXD208 ±
191 BXD209 ±
192 BXD210 ±
193 BXD211 ±
194 BXD212 ±
195 BXD213 ±
196 BXD214 ±
197 BXD215 ±
198 BXD216 ±
199 BXD217 ±
200 BXD218 ±
201 BXD219 ±
202 BXD220 ±
 
IndexSampleValue SE
1 B6D2F1 ±
2 D2B6F1 ±
3 C57BL/6J ±
4 DBA/2J ±
5 129S1/SvImJ ±
6 A/J ±
7 AKR/J ±
8 BALB/cByJ ±
9 BTBRT<+>tf/J ±
10 BXSB/MpJ ±
11 C3H/HeJ ±
12 FVB/NJ ±
13 KK/HlJ ±
14 MOLF/EiJ ±
15 NOD/ShiLtJ ±
16 NZB/BlNJ ±
17 NZO/HlLtJ ±
18 NZW/LacJ ±
19 PWD/PhJ ±
20 PWK/PhJ ±
21 WSB/EiJ ±

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