TIGEM Human Retina RNA-Seq (Sep16) RPKM log2 : ENSG00000080644: Display Trait

Trait Data and Analysis for Record ID ENSG00000080644

Details and Links

Gene Symbol: CHRNA3
Aliases: LNCR2; NACHRA3; PAOD2
Description: cholinergic receptor, 2C nicotinic, 2C alpha 3 (neuronal)
Location: Chr 15 @ 78.593052 Mb on the minus strand
Target Score:
Species and Group: Human, TIGEM-Retina-RNA-Seq
Database 3: TIGEM Human Retina RNA-Seq (Sep16) RPKM log2
Resource Links: Gene OMIM UniGene HomoloGene
BioGPS STRING PANTHER Gemma ABA EBI GWAS Wiki-Pi

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Basic Statistics

Include:

Basic Table
Probability Plot
Bar Graph (by name)
Bar Graph (by rank)
Box Plot

Statistic Value
N of Samples 50
Mean 8.346
Median 8.468
Standard Error (SE) 0.133
Standard Deviation (SD) 0.940
Minimum 5.633
Maximum 9.804
Range (log2) 4.171
Range (fold) 18.018
Interquartile Range 2.479

This plot evaluates whether data are normally distributed. Different symbols represent different groups.

More about Normal Probability Plots and more about interpreting these plots from the glossary

More about Box Plots

Basic Table
Probability Plot
Bar Graph (by name)
Bar Graph (by rank)
Box Plot

Statistic Value
N of Samples 49
Mean 8.320
Median 8.456
Standard Error (SE) 0.133
Standard Deviation (SD) 0.932
Minimum 5.633
Maximum 9.804
Range (log2) 4.171
Range (fold) 18.018
Interquartile Range 2.479

This plot evaluates whether data are normally distributed. Different symbols represent different groups.

More about Normal Probability Plots and more about interpreting these plots from the glossary

More about Box Plots
Fewer than 4 non-TIGEM-Retina-RNA-Seq case data were entered. No statistical analysis has been attempted.

Calculate Correlations

Sample r
Literature r
Tissue r

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Pearson Spearman Rank

The Sample Correlation is computed between trait data and any
other traits in the sample database selected above. Use Spearman Rank
when the sample size is small (<20) or when there are influential outliers.
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The Literature Correlation (Lit r) between this gene and all other genes is computed
using the Semantic Gene Organizer and human, rat, and mouse data from PubMed.
Values are ranked by Lit r, but Sample r and Tissue r are also displayed.

More on using Lit r
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Samples:

Pearson Spearman Rank

The Tissue Correlation (Tissue r) estimates the similarity of expression of two genes
or transcripts across different cells, tissues, or organs (glossary). Tissue correlations
are generated by analyzing expression in multiple samples usually taken from single cases.
Pearson and Spearman Rank correlations have been computed for all pairs of genes
using data from mouse samples.

Mapping Tools

Mapping options are disabled for data not matched with genotypes.

Review and Edit Data

Edit or delete values in the Trait Data boxes, and use the Reset option as needed.
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  and samples with no value (x) can be hidden by clicking Hide No Value .

Index Sample Value
1 RNA01
2 RNA02
3 RNA03
4 RNA04
5 RNA05
6 RNA06
7 RNA07
8 RNA08
9 RNA09
10 RNA10
11 RNA11
12 RNA12
13 RNA13
14 RNA14
15 RNA15
16 RNA16
17 RNA17
18 RNA18
19 RNA19
20 RNA20
21 RNA21
22 RNA22
23 RNA23
24 RNA24
25 RNA25
26 RNA26
27 RNA27
28 RNA28
29 RNA29
30 RNA30
31 RNA31
32 RNA32
33 RNA33
34 RNA34
35 RNA35
36 RNA36
37 RNA37
38 RNA38
39 RNA39
40 RNA40
41 RNA41
42 RNA42
43 RNA43
44 RNA44
45 RNA45
46 RNA46
47 RNA47
48 RNA48
49 RNA49
50 RNA50

Index Sample Value
1 RNA50