Details and Links

Gene Symbol:		Chrna3
Aliases:		BE944692
Description:		cholinergic receptor, nicotinic, alpha polypeptide 3
Location:		Chr 9 @ 55.012525 Mb on the minus strand
Target Score:
Species and Group:		Mouse, BDF2-1999
Database 3:		UCLA BDF2 Liver (1999) mlratio
Resource Links:		Gene  OMIM  HomoloGene
		BioGPS  STRING  PANTHER  Gemma  ABA  EBI GWAS  Wiki-Pi

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  Basic Statistics

Include: All Cases BDF2-1999 Only Non-BDF2-1999 Only    

Basic Table Probability Plot Bar Graph (by name) Bar Graph (by rank) Box Plot Statistic Value N of Samples 111 Mean 0.105 Median 0.048 Standard Error (SE) 0.053 Standard Deviation (SD) 0.557 Minimum -2.000 Maximum 2.000 This plot evaluates whether data are normally distributed. Different symbols represent different groups. More about Normal Probability Plots and more about interpreting these plots from the glossary More about Box Plots Basic Table Probability Plot Bar Graph (by name) Bar Graph (by rank) Box Plot Statistic Value N of Samples 110 Mean 0.106 Median 0.047 Standard Error (SE) 0.053 Standard Deviation (SD) 0.559 Minimum -2.000 Maximum 2.000 This plot evaluates whether data are normally distributed. Different symbols represent different groups. More about Normal Probability Plots and more about interpreting these plots from the glossary More about Box Plots Fewer than 4 non-BDF2-1999 case data were entered. No statistical analysis has been attempted.

  Calculate Correlations

Sample r Literature r Tissue r Database: BDF2 Genotype UCLA BDF2 Liver (1999) mlratio Return: top 25 top 50 top 100 top 200 top 500 top 1000 top 2000 top 5000 top 10000 top 15000 top 20000 top 30000 top 40000 top 60000 Samples: BDF2-1999 Only Non-BDF2-1999 Only All Cases Pearson    Spearman Rank The Sample Correlation is computed between trait data and any other traits in the sample database selected above. Use Spearman Rank when the sample size is small (<20) or when there are influential outliers. Database: BDF2 Genotype UCLA BDF2 Liver (1999) mlratio Return: top 25 top 50 top 100 top 200 top 500 top 1000 top 2000 top 5000 top 10000 top 15000 top 20000 top 30000 top 40000 top 60000 Samples: BDF2-1999 Only Non-BDF2-1999 Only All Cases The Literature Correlation (Lit r) between this gene and all other genes is computed using the Semantic Gene Organizer and human, rat, and mouse data from PubMed. Values are ranked by Lit r, but Sample r and Tissue r are also displayed. More on using Lit r Database: BDF2 Genotype UCLA BDF2 Liver (1999) mlratio Return: top 25 top 50 top 100 top 200 top 500 top 1000 top 2000 top 5000 top 10000 top 15000 top 20000 top 30000 top 40000 top 60000 Samples: BDF2-1999 Only Non-BDF2-1999 Only All Cases Pearson    Spearman Rank The Tissue Correlation (Tissue r) estimates the similarity of expression of two genes or transcripts across different cells, tissues, or organs (glossary). Tissue correlations are generated by analyzing expression in multiple samples usually taken from single cases. Pearson and Spearman Rank correlations have been computed for all pairs of genes using data from mouse samples.

  Mapping Tools

Interval Marker Regression Composite Pair-Scan Chromosome: All 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 Mapping Scale: Megabase Centimorgan Permutations: Bootstrap Test (n=2000) Use Parents Use Weighted Interval Mapping computes linkage maps for the entire genome or single chromosomes. The Permutation Test estimates suggestive and significant linkage scores. The Bootstrap Test estimates the precision of the QTL location. Display LRS above: Permutations: Display all LRS Use Parents Use Weighted Marker regression computes and displays LRS values for individual markers. This function also lists additive effects (phenotype units per allele) and dominance deviations for some datasets. Chromosome: All 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 Mapping Scale: Megabase Centimorgan Control Locus: Permutations: Bootstrap Test (n=2000) Use Parents Composite Interval Mapping allows you to control for a single marker as a cofactor. To find a control marker, run the Marker Regression function. Sort by: LRS Full LRS Interact Return: top 50 top 100 top 200 top 500 Permutation Test (n=500) Pair-Scan searches for pairs of chromosomal regions that are involved in two-locus epistatic interactions.

  Review and Edit Data

Edit or delete values in the Trait Data boxes, and use the Reset option as needed.   Block samples by index:         BDF2-1999 Only Non-BDF2-1999 Only       Options:                          Outliers highlighted in  yellow  can be hidden using the Hide Outliers button,   and samples with no value (x) can be hidden by clicking Hide No Value . Index Sample Value 1 B6D2F2 2 D2B6F2 3 C57BL/6J 4 DBA/2J 5 BDF2003 6 BDF2004 7 BDF2006 8 BDF2007 9 BDF2008 10 BDF2009 11 BDF2010 12 BDF2011 13 BDF2012 14 BDF2013 15 BDF2014 16 BDF2015 17 BDF2016 18 BDF2017 19 BDF2018 20 BDF2020 21 BDF2021 22 BDF2022 23 BDF2023 24 BDF2024 25 BDF2025 26 BDF2026 27 BDF2028 28 BDF2029 29 BDF2031 30 BDF2032 31 BDF2034 32 BDF2035 33 BDF2036 34 BDF2037 35 BDF2039 36 BDF2041 37 BDF2042 38 BDF2043 39 BDF2044 40 BDF2045 41 BDF2047 42 BDF2048 43 BDF2049 44 BDF2050 45 BDF2051 46 BDF2053 47 BDF2054 48 BDF2055 49 BDF2056 50 BDF2057 51 BDF2058 52 BDF2059 53 BDF2060 54 BDF2062 55 BDF2063 56 BDF2064 57 BDF2066 58 BDF2067 59 BDF2068 60 BDF2070 61 BDF2071 62 BDF2074 63 BDF2076 64 BDF2078 65 BDF2081 66 BDF2083 67 BDF2085 68 BDF2087 69 BDF2088 70 BDF2090 71 BDF2091 72 BDF2092 73 BDF2095 74 BDF2097 75 BDF2098 76 BDF2099 77 BDF2100 78 BDF2101 79 BDF2102 80 BDF2103 81 BDF2104 82 BDF2105 83 BDF2106 84 BDF2107 85 BDF2109 86 BDF2111 87 BDF2112 88 BDF2113 89 BDF2114 90 BDF2116 91 BDF2117 92 BDF2120 93 BDF2122 94 BDF2123 95 BDF2124 96 BDF2125 97 BDF2126 98 BDF2127 99 BDF2128 100 BDF2129 101 BDF2130 102 BDF2134 103 BDF2137 104 BDF2138 105 BDF2140 106 BDF2142 107 BDF2143 108 BDF2144 109 BDF2147 110 BDF2149 111 BDF2150 112 BDF2151 113 BDF2155 114 BDF2156 115 BDF2157   Index Sample Value 1 B6D2F2 2 D2B6F2 3 C57BL/6J 4 DBA/2J 5 BDF2157