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Trait Data and Analysis  for Record ID 10024411767

  Details and Links

Gene Symbol: Chrna3
Description: cholinergic receptor, nicotinic, alpha polypeptide 3
Location: Chr 9 @ 55.012656 Mb on the minus strand
Target Score:
Species and Group: Mouse, BHF2
Database 3: UCLA BHF2 Adipose Female mlratio
Resource Links: Gene  OMIM  UniGene  GenBank  HomoloGene  
BioGPS  STRING  PANTHER  Gemma  ABA  EBI GWAS  Wiki-Pi  

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  Basic Statistics



StatisticValue
N of Samples135
Mean0.058
Median0.049
Standard Error (SE)0.007
Standard Deviation (SD)0.078
Minimum-0.247
Maximum0.353

nP_dh76JpeN.gif


This plot evaluates whether data are normally distributed. Different symbols represent different groups.

More about Normal Probability Plots and more about interpreting these plots from the glossary

Box_YIjXr6hh.gif

More about Box Plots

Bar_9mNfbEYV.gif

Bar_DnkI4A4F.gif

  Calculate Correlations

Database:
Return:

Pearson    Spearman Rank



The Sample Correlation is computed between trait data and any
other traits in the sample database selected above. Use Spearman Rank
when the sample size is small (<20) or when there are influential outliers.
Database:
Return:



The Literature Correlation (Lit r) between this gene and all other genes is computed
using the Semantic Gene Organizer and human, rat, and mouse data from PubMed.
Values are ranked by Lit r, but Sample r and Tissue r are also displayed.

More on using Lit r
Database:
Return:

Pearson    Spearman Rank



The Tissue Correlation (Tissue r) estimates the similarity of expression of two genes
or transcripts across different cells, tissues, or organs (glossary). Tissue correlations
are generated by analyzing expression in multiple samples usually taken from single cases.
Pearson and Spearman Rank correlations have been computed for all pairs of genes
using data from mouse samples.

  Mapping Tools

Chromosome:
Mapping Scale:
Permutations:

Bootstrap Test (n=2000)
Use Parents
Use Weighted



Interval Mapping computes linkage maps for the entire genome or single
chromosomes. The Permutation Test estimates suggestive and significant
linkage scores. The Bootstrap Test estimates the precision of the QTL location.

Display LRS above:
Permutations:

Display all LRS
Use Parents
Use Weighted



Marker regression computes and displays LRS values for individual markers.
This function also lists additive effects (phenotype units per allele) and
dominance deviations for some datasets.

Chromosome:
Mapping Scale:
Control Locus:
Permutations:

Bootstrap Test (n=2000)
Use Parents



Composite Interval Mapping allows you to control for a single marker as
a cofactor. To find a control marker, run the Marker Regression function.

Sort by:
Return:

Permutation Test (n=500)



Pair-Scan searches for pairs of chromosomal regions that are
involved in two-locus epistatic interactions.

  Review and Edit Data

Edit or delete values in the Trait Data boxes, and use the Reset option as needed.

  Block samples by index:        
  Options:                       


  Outliers highlighted in  yellow  can be hidden using the Hide Outliers button,
  and samples with no value (x) can be hidden by clicking Hide No Value .


IndexSampleValue
1 B6HF2
2 HB6F2
3 C57BL/6J
4 C3H/HeJ
5 BHF2001
6 BHF2002
7 BHF2003
8 BHF2004
9 BHF2005
10 BHF2006
11 BHF2007
12 BHF2008
13 BHF2009
14 BHF2010
15 BHF2011
16 BHF2013
17 BHF2014
18 BHF2015
19 BHF2016
20 BHF2017
21 BHF2018
22 BHF2019
23 BHF2020
24 BHF2021
25 BHF2022
26 BHF2023
27 BHF2024
28 BHF2026
29 BHF2027
30 BHF2028
31 BHF2029
32 BHF2030
33 BHF2031
34 BHF2032
35 BHF2033
36 BHF2034
37 BHF2035
38 BHF2036
39 BHF2037
40 BHF2038
41 BHF2039
42 BHF2040
43 BHF2041
44 BHF2042
45 BHF2043
46 BHF2044
47 BHF2045
48 BHF2046
49 BHF2047
50 BHF2048
51 BHF2049
52 BHF2050
53 BHF2051
54 BHF2052
55 BHF2054
56 BHF2055
57 BHF2056
58 BHF2057
59 BHF2059
60 BHF2060
61 BHF2061
62 BHF2062
63 BHF2063
64 BHF2064
65 BHF2065
66 BHF2066
67 BHF2067
68 BHF2068
69 BHF2069
70 BHF2070
71 BHF2071
72 BHF2072
73 BHF2073
74 BHF2074
75 BHF2075
76 BHF2076
77 BHF2077
78 BHF2078
79 BHF2079
80 BHF2080
81 BHF2081
82 BHF2082
83 BHF2083
84 BHF2084
85 BHF2085
86 BHF2086
87 BHF2087
88 BHF2088
89 BHF2089
90 BHF2091
91 BHF2092
92 BHF2093
93 BHF2094
94 BHF2103
95 BHF2104
96 BHF2105
97 BHF2107
98 BHF2108
99 BHF2109
100 BHF2110
101 BHF2111
102 BHF2112
103 BHF2113
104 BHF2114
105 BHF2116
106 BHF2117
107 BHF2118
108 BHF2119
109 BHF2120
110 BHF2121
111 BHF2122
112 BHF2123
113 BHF2124
114 BHF2125
115 BHF2126
116 BHF2127
117 BHF2140
118 BHF2142
119 BHF2143
120 BHF2144
121 BHF2145
122 BHF2146
123 BHF2147
124 BHF2148
125 BHF2149
126 BHF2150
127 BHF2151
128 BHF2152
129 BHF2153
130 BHF2154
131 BHF2155
132 BHF2156
133 BHF2157
134 BHF2158
135 BHF2159
136 BHF2160
137 BHF2161
138 BHF2162
139 BHF2163
140 BHF2164
141 BHF2165
142 BHF2166
143 BHF2167
144 BHF2169
145 BHF2170
146 BHF2171
147 BHF2172
148 BHF2173
149 BHF2174
150 BHF2175
151 BHF2176
152 BHF2177
153 BHF2178
154 BHF2179
155 BHF2180
156 BHF2181
157 BHF2182
158 BHF2183
159 BHF2184
160 BHF2185
161 BHF2186
162 BHF2187
163 BHF2188
164 BHF2189
165 BHF2190
166 BHF2191
167 BHF2192
168 BHF2193
169 BHF2194
170 BHF2195
171 BHF2196
172 BHF2197
173 BHF2198
174 BHF2199
175 BHF2200
176 BHF2201
177 BHF2202
178 BHF2207
179 BHF2208
180 BHF2209
181 BHF2210
182 BHF2211
183 BHF2212
184 BHF2213
185 BHF2214
186 BHF2215
187 BHF2216
188 BHF2217
189 BHF2218
190 BHF2219
191 BHF2220
192 BHF2221
193 BHF2222
194 BHF2223
195 BHF2224
196 BHF2225
197 BHF2226
198 BHF2227
199 BHF2228
200 BHF2230
201 BHF2231
202 BHF2232
203 BHF2233
204 BHF2234
205 BHF2235
206 BHF2236
207 BHF2237
208 BHF2238
209 BHF2239
210 BHF2241
211 BHF2242
212 BHF2243
213 BHF2244
214 BHF2245
215 BHF2246
216 BHF2247
217 BHF2248
218 BHF2249
219 BHF2250
220 BHF2251
221 BHF2252
222 BHF2253
223 BHF2254
224 BHF2255
225 BHF2256
226 BHF2257
227 BHF2258
228 BHF2260
229 BHF2261
230 BHF2262
231 BHF2263
232 BHF2264
233 BHF2265
234 BHF2266
235 BHF2267
236 BHF2268
237 BHF2269
238 BHF2270
239 BHF2271
240 BHF2272
241 BHF2273
242 BHF2274
243 BHF2275
244 BHF2276
245 BHF2278
246 BHF2279
247 BHF2280
248 BHF2281
249 BHF2282
250 BHF2283
251 BHF2284
252 BHF2285
253 BHF2286
254 BHF2287
255 BHF2288
256 BHF2289
257 BHF2290
258 BHF2291
259 BHF2292
260 BHF2293
261 BHF2294
262 BHF2295
263 BHF2296
264 BHF2297
265 BHF2298
266 BHF2299
267 BHF2300
268 BHF2301
269 BHF2302
270 BHF2303
271 BHF2304
272 BHF2305
273 BHF2306
274 BHF2307
275 BHF2308
276 BHF2309
277 BHF2310
278 BHF2311
279 BHF2312
280 BHF2313
281 BHF2314
282 BHF2315
283 BHF2316
284 BHF2317
285 BHF2318
286 BHF2319
287 BHF2320
288 BHF2321
289 BHF2322
290 BHF2323
291 BHF2324
292 BHF2325
293 BHF2326
294 BHF2327
295 BHF2328
296 BHF2329
297 BHF2330
298 BHF2331
299 BHF2332
300 BHF2333
301 BHF2334
302 BHF2335
303 BHF2336
304 BHF2337
305 BHF2338
306 BHF2339
307 BHF2340
308 BHF2341
309 BHF2342
310 BHF2343
311 BHF2344
312 BHF2345
313 BHF2346
314 BHF2347
315 BHF2348
316 BHF2349
317 BHF2350
318 BHF2351
319 BHF2352
320 BHF2353
321 BHF2354
322 BHF2355
323 BHF2356
324 BHF2357
325 BHF2358
326 BHF2359

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