Details and Links

Gene Symbol:		Chrna3
Description:		cholinergic receptor, nicotinic, alpha polypeptide 3
Location:		Chr 9 @ 55.012656 Mb on the minus strand
Target Score:
Species and Group:		Mouse, BHHBF2
Database 3:		UCLA BHHBF2 Liver Male Only
Resource Links:		Gene  OMIM  UniGene  GenBank  HomoloGene
		BioGPS  STRING  PANTHER  Gemma  ABA  EBI GWAS  Wiki-Pi

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  Basic Statistics

Include: All Cases BHHBF2 Only Non-BHHBF2 Only    

Basic Table Probability Plot Bar Graph (by name) Bar Graph (by rank) Box Plot Statistic Value N of Samples 141 Mean -0.009 Median -0.005 Standard Error (SE) 0.003 Standard Deviation (SD) 0.033 Minimum -0.094 Maximum 0.062 This plot evaluates whether data are normally distributed. Different symbols represent different groups. More about Normal Probability Plots and more about interpreting these plots from the glossary More about Box Plots Basic Table Probability Plot Bar Graph (by name) Bar Graph (by rank) Box Plot Statistic Value N of Samples 140 Mean -0.009 Median -0.005 Standard Error (SE) 0.003 Standard Deviation (SD) 0.033 Minimum -0.094 Maximum 0.062 This plot evaluates whether data are normally distributed. Different symbols represent different groups. More about Normal Probability Plots and more about interpreting these plots from the glossary More about Box Plots Fewer than 4 non-BHHBF2 case data were entered. No statistical analysis has been attempted.

  Calculate Correlations

Sample r Literature r Tissue r Database: HBBH F2 Genotype UCLA BHHBF2 Adipose (2005) mlratio UCLA BHHBF2 Adipose Male Only UCLA BHHBF2 Adipose Female Only UCLA BHHBF2 Brain (2005) mlratio UCLA BHHBF2 Brain Male Only UCLA BHHBF2 Brain Female Only UCLA BHHBF2 Liver (2005) mlratio UCLA BHHBF2 Liver Male Only UCLA BHHBF2 Liver Female Only UCLA BHHBF2 Muscle (2005) mlratio UCLA BHHBF2 Muscle Male Only UCLA BHHBF2 Muscle Female Only Return: top 25 top 50 top 100 top 200 top 500 top 1000 top 2000 top 5000 top 10000 top 15000 top 20000 top 30000 top 40000 top 60000 Samples: BHHBF2 Only Non-BHHBF2 Only All Cases Pearson    Spearman Rank The Sample Correlation is computed between trait data and any other traits in the sample database selected above. Use Spearman Rank when the sample size is small (<20) or when there are influential outliers. Database: HBBH F2 Genotype UCLA BHHBF2 Adipose (2005) mlratio UCLA BHHBF2 Adipose Male Only UCLA BHHBF2 Adipose Female Only UCLA BHHBF2 Brain (2005) mlratio UCLA BHHBF2 Brain Male Only UCLA BHHBF2 Brain Female Only UCLA BHHBF2 Liver (2005) mlratio UCLA BHHBF2 Liver Male Only UCLA BHHBF2 Liver Female Only UCLA BHHBF2 Muscle (2005) mlratio UCLA BHHBF2 Muscle Male Only UCLA BHHBF2 Muscle Female Only Return: top 25 top 50 top 100 top 200 top 500 top 1000 top 2000 top 5000 top 10000 top 15000 top 20000 top 30000 top 40000 top 60000 Samples: BHHBF2 Only Non-BHHBF2 Only All Cases The Literature Correlation (Lit r) between this gene and all other genes is computed using the Semantic Gene Organizer and human, rat, and mouse data from PubMed. Values are ranked by Lit r, but Sample r and Tissue r are also displayed. More on using Lit r Database: HBBH F2 Genotype UCLA BHHBF2 Adipose (2005) mlratio UCLA BHHBF2 Adipose Male Only UCLA BHHBF2 Adipose Female Only UCLA BHHBF2 Brain (2005) mlratio UCLA BHHBF2 Brain Male Only UCLA BHHBF2 Brain Female Only UCLA BHHBF2 Liver (2005) mlratio UCLA BHHBF2 Liver Male Only UCLA BHHBF2 Liver Female Only UCLA BHHBF2 Muscle (2005) mlratio UCLA BHHBF2 Muscle Male Only UCLA BHHBF2 Muscle Female Only Return: top 25 top 50 top 100 top 200 top 500 top 1000 top 2000 top 5000 top 10000 top 15000 top 20000 top 30000 top 40000 top 60000 Samples: BHHBF2 Only Non-BHHBF2 Only All Cases Pearson    Spearman Rank The Tissue Correlation (Tissue r) estimates the similarity of expression of two genes or transcripts across different cells, tissues, or organs (glossary). Tissue correlations are generated by analyzing expression in multiple samples usually taken from single cases. Pearson and Spearman Rank correlations have been computed for all pairs of genes using data from mouse samples.

  Mapping Tools

Interval Marker Regression Composite Pair-Scan Chromosome: All 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 X Mapping Scale: Megabase Centimorgan Permutations: Bootstrap Test (n=2000) Use Parents Use Weighted Interval Mapping computes linkage maps for the entire genome or single chromosomes. The Permutation Test estimates suggestive and significant linkage scores. The Bootstrap Test estimates the precision of the QTL location. Display LRS above: Permutations: Display all LRS Use Parents Use Weighted Marker regression computes and displays LRS values for individual markers. This function also lists additive effects (phenotype units per allele) and dominance deviations for some datasets. Chromosome: All 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 X Mapping Scale: Megabase Centimorgan Control Locus: Permutations: Bootstrap Test (n=2000) Use Parents Composite Interval Mapping allows you to control for a single marker as a cofactor. To find a control marker, run the Marker Regression function. Sort by: LRS Full LRS Interact Return: top 50 top 100 top 200 top 500 Permutation Test (n=500) Pair-Scan searches for pairs of chromosomal regions that are involved in two-locus epistatic interactions.

  Review and Edit Data

Edit or delete values in the Trait Data boxes, and use the Reset option as needed.   Block samples by index:         BHHBF2 Only Non-BHHBF2 Only       Options:                          Outliers highlighted in  yellow  can be hidden using the Hide Outliers button,   and samples with no value (x) can be hidden by clicking Hide No Value . Index Sample Value 1 B6HF2 2 HB6F2 3 C57BL/6J 4 C3H/HeJ 5 BHHBF2051 6 BHHBF2052 7 BHHBF2053 8 BHHBF2054 9 BHHBF2055 10 BHHBF2056 11 BHHBF2057 12 BHHBF2058 13 BHHBF2059 14 BHHBF2060 15 BHHBF2061 16 BHHBF2062 17 BHHBF2063 18 BHHBF2064 19 BHHBF2065 20 BHHBF2066 21 BHHBF2067 22 BHHBF2068 23 BHHBF2069 24 BHHBF2070 25 BHHBF2071 26 BHHBF2072 27 BHHBF2073 28 BHHBF2074 29 BHHBF2075 30 BHHBF2076 31 BHHBF2077 32 BHHBF2078 33 BHHBF2079 34 BHHBF2080 35 BHHBF2081 36 BHHBF2082 37 BHHBF2083 38 BHHBF2084 39 BHHBF2085 40 BHHBF2086 41 BHHBF2087 42 BHHBF2088 43 BHHBF2089 44 BHHBF2090 45 BHHBF2091 46 BHHBF2092 47 BHHBF2093 48 BHHBF2094 49 BHHBF2095 50 BHHBF2096 51 BHHBF2097 52 BHHBF2098 53 BHHBF2099 54 BHHBF2100 55 BHHBF2101 56 BHHBF2102 57 BHHBF2104 58 BHHBF2105 59 BHHBF2106 60 BHHBF2107 61 BHHBF2108 62 BHHBF2109 63 BHHBF2110 64 BHHBF2111 65 BHHBF2112 66 BHHBF2113 67 BHHBF2114 68 BHHBF2115 69 BHHBF2116 70 BHHBF2117 71 BHHBF2118 72 BHHBF2119 73 BHHBF2120 74 BHHBF2121 75 BHHBF2122 76 BHHBF2123 77 BHHBF2124 78 BHHBF2125 79 BHHBF2126 80 BHHBF2127 81 BHHBF2128 82 BHHBF2129 83 BHHBF2130 84 BHHBF2131 85 BHHBF2132 86 BHHBF2133 87 BHHBF2134 88 BHHBF2135 89 BHHBF2136 90 BHHBF2137 91 BHHBF2138 92 BHHBF2139 93 BHHBF2140 94 BHHBF2141 95 BHHBF2142 96 BHHBF2143 97 BHHBF2144 98 BHHBF2145 99 BHHBF2146 100 BHHBF2147 101 BHHBF2148 102 BHHBF2149 103 BHHBF2150 104 BHHBF2151 105 BHHBF2152 106 BHHBF2153 107 BHHBF2154 108 BHHBF2155 109 BHHBF2156 110 BHHBF2157 111 BHHBF2158 112 BHHBF2159 113 BHHBF2160 114 BHHBF2161 115 BHHBF2162 116 BHHBF2163 117 BHHBF2164 118 BHHBF2165 119 BHHBF2166 120 BHHBF2167 121 BHHBF2168 122 BHHBF2169 123 BHHBF2170 124 BHHBF2171 125 BHHBF2172 126 BHHBF2173 127 BHHBF2174 128 BHHBF2175 129 BHHBF2176 130 BHHBF2177 131 BHHBF2178 132 BHHBF2179 133 BHHBF2180 134 BHHBF2181 135 BHHBF2182 136 BHHBF2183 137 BHHBF2184 138 BHHBF2185 139 BHHBF2186 140 BHHBF2187 141 BHHBF2188 142 BHHBF2189 143 BHHBF2190 144 BHHBF2191 145 BHHBF2192 146 BHHBF2193 147 BHHBF2194 148 BHHBF2195 149 BHHBF2196 150 BHHBF2197 151 BHHBF2198 152 BHHBF2199 153 BHHBF2200 154 BHHBF2201 155 BHHBF2202 156 BHHBF2203 157 BHHBF2204 158 BHHBF2205 159 BHHBF2206 160 BHHBF2207 161 BHHBF2208 162 BHHBF2209 163 BHHBF2210 164 BHHBF2211 165 BHHBF2212 166 BHHBF2213 167 BHHBF2214 168 BHHBF2215 169 BHHBF2216 170 BHHBF2217 171 BHHBF2218 172 BHHBF2219 173 BHHBF2220 174 BHHBF2221 175 BHHBF2222 176 BHHBF2223 177 BHHBF2224 178 BHHBF2225 179 BHHBF2226 180 BHHBF2227 181 BHHBF2229 182 BHHBF2230 183 BHHBF2231 184 BHHBF2232 185 BHHBF2233 186 BHHBF2234 187 BHHBF2235 188 BHHBF2236 189 BHHBF2237 190 BHHBF2238 191 BHHBF2239 192 BHHBF2240 193 BHHBF2241 194 BHHBF2242 195 BHHBF2243 196 BHHBF2244 197 BHHBF2245 198 BHHBF2246 199 BHHBF2247 200 BHHBF2248 201 BHHBF2249 202 BHHBF2250 203 BHHBF2251 204 BHHBF2252 205 BHHBF2253 206 BHHBF2254 207 BHHBF2255 208 BHHBF2256 209 BHHBF2257 210 BHHBF2258 211 BHHBF2259 212 BHHBF2260 213 BHHBF2261 214 BHHBF2262 215 BHHBF2263 216 BHHBF2264 217 BHHBF2265 218 BHHBF2266 219 BHHBF2267 220 BHHBF2268 221 BHHBF2269 222 BHHBF2270 223 BHHBF2271 224 BHHBF2272 225 BHHBF2273 226 BHHBF2274 227 BHHBF2275 228 BHHBF2276 229 BHHBF2277 230 BHHBF2278 231 BHHBF2279 232 BHHBF2280 233 BHHBF2281 234 BHHBF2282 235 BHHBF2283 236 BHHBF2284 237 BHHBF2285 238 BHHBF2286 239 BHHBF2287 240 BHHBF2288 241 BHHBF2289 242 BHHBF2290 243 BHHBF2291 244 BHHBF2292 245 BHHBF2293 246 BHHBF2294 247 BHHBF2295 248 BHHBF2296 249 BHHBF2297 250 BHHBF2298 251 BHHBF2299 252 BHHBF2300 253 BHHBF2301 254 BHHBF2302 255 BHHBF2303 256 BHHBF2304 257 BHHBF2305 258 BHHBF2306 259 BHHBF2307 260 BHHBF2308 261 BHHBF2309 262 BHHBF2310 263 BHHBF2311 264 BHHBF2312 265 BHHBF2313 266 BHHBF2314 267 BHHBF2315 268 BHHBF2316 269 BHHBF2317 270 BHHBF2318 271 BHHBF2319 272 BHHBF2320 273 BHHBF2321 274 BHHBF2322 275 BHHBF2323 276 BHHBF2324 277 BHHBF2325 278 BHHBF2326 279 BHHBF2327 280 BHHBF2328 281 BHHBF2329 282 BHHBF2330 283 BHHBF2331 284 BHHBF2332 285 BHHBF2333 286 BHHBF2334 287 BHHBF2335 288 BHHBF2336 289 BHHBF2337 290 BHHBF2338 291 BHHBF2339 292 BHHBF2340 293 BHHBF2341 294 BHHBF2342 295 BHHBF2343 296 BHHBF2344 297 BHHBF2345 298 BHHBF2346 299 BHHBF2347 300 BHHBF2348 301 BHHBF2349 302 BHHBF2350 303 BHHBF2351 304 BHHBF2352 305 BHHBF2353 306 BHHBF2354 307 BHHBF2355 308 BHHBF2356 309 BHHBF2357 310 BHHBF2358 311 BHHBF2359 312 BHHBF2360 313 BHHBF2361   Index Sample Value 1 B6HF2 2 HB6F2 3 C57BL/6J 4 C3H/HeJ 5 BHHBF2361