Details and Links

Gene Symbol:		Chrna3
Aliases:		NM_145129
Description:		cholinergic receptor, nicotinic, alpha polypeptide 3
Location:		Chr 9 @ 55.011342 Mb
Target Score:
Species and Group:		Mouse, CTB6F2
Database 3:		UCLA CTB6B6CTF2 Adipose Male mlratio
Resource Links:		OMIM  UniGene  GenBank
		STRING  ABA  EBI GWAS  Wiki-Pi

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  Basic Statistics

Basic Table Probability Plot Bar Graph (by name) Bar Graph (by rank) Box Plot Statistic Value N of Samples 154 Mean 0.100 Median 0.091 Standard Error (SE) 0.005 Standard Deviation (SD) 0.063 Minimum -0.060 Maximum 0.438 This plot evaluates whether data are normally distributed. Different symbols represent different groups. More about Normal Probability Plots and more about interpreting these plots from the glossary More about Box Plots

  Calculate Correlations

Sample r Literature r Tissue r Database: CastB6/B6Cast F2 UCLA Published Phenotypes CTB6F2 Genotype UCLA CTB6/B6CTF2 Adipose (2005) mlratio UCLA CTB6B6CTF2 Adipose Female mlratio UCLA CTB6B6CTF2 Adipose Male mlratio UCLA CTB6/B6CTF2 Brain (2005) mlratio UCLA CTB6/B6CTF2 Brain Males (2005) mlratio UCLA CTB6/B6CTF2 Brain Females (2005) mlratio UCLA CTB6/B6CTF2 Liver (2005) mlratio UCLA CTB6B6CTF2 Liver Female mlratio UCLA CTB6B6CTF2 Liver Male mlratio UCLA CTB6/B6CTF2 Muscle (2005) mlratio UCLA CTB6B6CTF2 Muscle Female mlratio UCLA CTB6B6CTF2 Muscle Male mlratio Return: top 25 top 50 top 100 top 200 top 500 top 1000 top 2000 top 5000 top 10000 top 15000 top 20000 top 30000 top 40000 top 60000 Pearson    Spearman Rank The Sample Correlation is computed between trait data and any other traits in the sample database selected above. Use Spearman Rank when the sample size is small (<20) or when there are influential outliers. Database: CastB6/B6Cast F2 UCLA Published Phenotypes CTB6F2 Genotype UCLA CTB6/B6CTF2 Adipose (2005) mlratio UCLA CTB6B6CTF2 Adipose Female mlratio UCLA CTB6B6CTF2 Adipose Male mlratio UCLA CTB6/B6CTF2 Brain (2005) mlratio UCLA CTB6/B6CTF2 Brain Males (2005) mlratio UCLA CTB6/B6CTF2 Brain Females (2005) mlratio UCLA CTB6/B6CTF2 Liver (2005) mlratio UCLA CTB6B6CTF2 Liver Female mlratio UCLA CTB6B6CTF2 Liver Male mlratio UCLA CTB6/B6CTF2 Muscle (2005) mlratio UCLA CTB6B6CTF2 Muscle Female mlratio UCLA CTB6B6CTF2 Muscle Male mlratio Return: top 25 top 50 top 100 top 200 top 500 top 1000 top 2000 top 5000 top 10000 top 15000 top 20000 top 30000 top 40000 top 60000 The Literature Correlation (Lit r) between this gene and all other genes is computed using the Semantic Gene Organizer and human, rat, and mouse data from PubMed. Values are ranked by Lit r, but Sample r and Tissue r are also displayed. More on using Lit r Database: CastB6/B6Cast F2 UCLA Published Phenotypes CTB6F2 Genotype UCLA CTB6/B6CTF2 Adipose (2005) mlratio UCLA CTB6B6CTF2 Adipose Female mlratio UCLA CTB6B6CTF2 Adipose Male mlratio UCLA CTB6/B6CTF2 Brain (2005) mlratio UCLA CTB6/B6CTF2 Brain Males (2005) mlratio UCLA CTB6/B6CTF2 Brain Females (2005) mlratio UCLA CTB6/B6CTF2 Liver (2005) mlratio UCLA CTB6B6CTF2 Liver Female mlratio UCLA CTB6B6CTF2 Liver Male mlratio UCLA CTB6/B6CTF2 Muscle (2005) mlratio UCLA CTB6B6CTF2 Muscle Female mlratio UCLA CTB6B6CTF2 Muscle Male mlratio Return: top 25 top 50 top 100 top 200 top 500 top 1000 top 2000 top 5000 top 10000 top 15000 top 20000 top 30000 top 40000 top 60000 Pearson    Spearman Rank The Tissue Correlation (Tissue r) estimates the similarity of expression of two genes or transcripts across different cells, tissues, or organs (glossary). Tissue correlations are generated by analyzing expression in multiple samples usually taken from single cases. Pearson and Spearman Rank correlations have been computed for all pairs of genes using data from mouse samples.

  Mapping Tools

Interval Marker Regression Composite Pair-Scan Chromosome: All 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 X Mapping Scale: Megabase Centimorgan Permutations: Bootstrap Test (n=2000) Use Parents Use Weighted Interval Mapping computes linkage maps for the entire genome or single chromosomes. The Permutation Test estimates suggestive and significant linkage scores. The Bootstrap Test estimates the precision of the QTL location. Display LRS above: Permutations: Display all LRS Use Parents Use Weighted Marker regression computes and displays LRS values for individual markers. This function also lists additive effects (phenotype units per allele) and dominance deviations for some datasets. Chromosome: All 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 X Mapping Scale: Megabase Centimorgan Control Locus: Permutations: Bootstrap Test (n=2000) Use Parents Composite Interval Mapping allows you to control for a single marker as a cofactor. To find a control marker, run the Marker Regression function. Sort by: LRS Full LRS Interact Return: top 50 top 100 top 200 top 500 Permutation Test (n=500) Pair-Scan searches for pairs of chromosomal regions that are involved in two-locus epistatic interactions.

  Review and Edit Data

Edit or delete values in the Trait Data boxes, and use the Reset option as needed.   Block samples by index:           Options:                          Outliers highlighted in  yellow  can be hidden using the Hide Outliers button,   and samples with no value (x) can be hidden by clicking Hide No Value . Index Sample Value 1 CTB6F2 2 B6CTF2 3 C57BL/6J 4 Castaneous 5 CTB6F2001 6 CTB6F2002 7 CTB6F2003 8 CTB6F2004 9 CTB6F2005 10 CTB6F2006 11 CTB6F2007 12 CTB6F2008 13 CTB6F2009 14 CTB6F2010 15 CTB6F2011 16 CTB6F2013 17 CTB6F2015 18 CTB6F2016 19 CTB6F2017 20 CTB6F2018 21 CTB6F2019 22 CTB6F2020 23 CTB6F2021 24 CTB6F2022 25 CTB6F2023 26 CTB6F2024 27 CTB6F2025 28 CTB6F2026 29 CTB6F2027 30 CTB6F2028 31 CTB6F2029 32 CTB6F2033 33 CTB6F2034 34 CTB6F2035 35 CTB6F2036 36 CTB6F2039 37 CTB6F2040 38 CTB6F2041 39 CTB6F2042 40 CTB6F2043 41 CTB6F2045 42 CTB6F2046 43 CTB6F2047 44 CTB6F2048 45 CTB6F2049 46 CTB6F2053 47 CTB6F2054 48 CTB6F2055 49 CTB6F2057 50 CTB6F2058 51 CTB6F2059 52 CTB6F2060 53 CTB6F2061 54 CTB6F2062 55 CTB6F2063 56 CTB6F2064 57 CTB6F2065 58 CTB6F2066 59 CTB6F2067 60 CTB6F2068 61 CTB6F2069 62 CTB6F2070 63 CTB6F2071 64 CTB6F2072 65 CTB6F2073 66 CTB6F2074 67 CTB6F2075 68 CTB6F2076 69 CTB6F2077 70 CTB6F2078 71 CTB6F2079 72 CTB6F2080 73 CTB6F2081 74 CTB6F2083 75 CTB6F2085 76 CTB6F2088 77 CTB6F2089 78 CTB6F2090 79 CTB6F2091 80 CTB6F2093 81 CTB6F2094 82 CTB6F2095 83 CTB6F2097 84 CTB6F2098 85 CTB6F2099 86 CTB6F2101 87 CTB6F2104 88 CTB6F2108 89 CTB6F2109 90 CTB6F2111 91 CTB6F2112 92 CTB6F2113 93 CTB6F2114 94 CTB6F2115 95 CTB6F2116 96 CTB6F2117 97 CTB6F2118 98 CTB6F2119 99 CTB6F2120 100 CTB6F2122 101 CTB6F2123 102 CTB6F2126 103 CTB6F2127 104 CTB6F2128 105 CTB6F2129 106 CTB6F2130 107 CTB6F2132 108 CTB6F2133 109 CTB6F2134 110 CTB6F2135 111 CTB6F2137 112 CTB6F2138 113 CTB6F2139 114 CTB6F2140 115 CTB6F2141 116 CTB6F2142 117 CTB6F2144 118 CTB6F2145 119 CTB6F2146 120 CTB6F2147 121 CTB6F2148 122 CTB6F2150 123 CTB6F2151 124 CTB6F2152 125 CTB6F2154 126 CTB6F2155 127 CTB6F2157 128 CTB6F2159 129 CTB6F2160 130 CTB6F2161 131 CTB6F2162 132 CTB6F2163 133 CTB6F2164 134 CTB6F2165 135 CTB6F2167 136 CTB6F2168 137 CTB6F2169 138 CTB6F2170 139 CTB6F2171 140 CTB6F2173 141 CTB6F2174 142 CTB6F2175 143 CTB6F2178 144 CTB6F2179 145 CTB6F2180 146 CTB6F2181 147 CTB6F2182 148 CTB6F2183 149 CTB6F2184 150 CTB6F2185 151 CTB6F2186 152 CTB6F2187 153 CTB6F2188 154 CTB6F2189 155 CTB6F2190 156 CTB6F2191 157 CTB6F2193 158 CTB6F2194 159 CTB6F2196 160 CTB6F2197 161 CTB6F2198 162 CTB6F2199 163 CTB6F2200 164 CTB6F2201 165 CTB6F2202 166 CTB6F2203 167 CTB6F2204 168 CTB6F2205 169 CTB6F2207 170 CTB6F2208 171 CTB6F2210 172 CTB6F2211 173 CTB6F2212 174 CTB6F2213 175 CTB6F2214 176 CTB6F2215 177 CTB6F2216 178 CTB6F2217 179 CTB6F2218 180 CTB6F2220 181 CTB6F2222 182 CTB6F2223 183 CTB6F2224 184 CTB6F2225 185 CTB6F2227 186 CTB6F2228 187 CTB6F2229 188 CTB6F2230 189 CTB6F2231 190 CTB6F2232 191 CTB6F2234 192 CTB6F2235 193 CTB6F2236 194 CTB6F2237 195 CTB6F2238 196 CTB6F2239 197 CTB6F2240 198 CTB6F2241 199 CTB6F2243 200 CTB6F2245 201 CTB6F2246 202 CTB6F2247 203 CTB6F2250 204 CTB6F2252 205 CTB6F2253 206 CTB6F2256 207 CTB6F2257 208 CTB6F2258 209 CTB6F2259 210 CTB6F2260 211 CTB6F2261 212 CTB6F2262 213 CTB6F2263 214 CTB6F2264 215 CTB6F2265 216 CTB6F2266 217 CTB6F2267 218 CTB6F2268 219 CTB6F2269 220 CTB6F2270 221 CTB6F2271 222 CTB6F2272 223 CTB6F2273 224 CTB6F2274 225 CTB6F2275 226 CTB6F2276 227 CTB6F2277 228 CTB6F2278 229 CTB6F2279 230 CTB6F2280 231 CTB6F2281 232 CTB6F2282 233 CTB6F2283 234 CTB6F2284 235 CTB6F2285 236 CTB6F2286 237 CTB6F2287 238 CTB6F2288 239 CTB6F2289 240 CTB6F2290 241 CTB6F2291 242 CTB6F2292 243 CTB6F2293 244 CTB6F2294 245 CTB6F2296 246 CTB6F2297 247 CTB6F2298 248 CTB6F2299 249 CTB6F2300 250 CTB6F2301 251 CTB6F2302 252 CTB6F2303 253 CTB6F2304 254 CTB6F2305 255 CTB6F2306 256 CTB6F2307 257 CTB6F2308 258 CTB6F2309 259 CTB6F2311 260 CTB6F2312 261 CTB6F2313 262 CTB6F2314 263 CTB6F2315 264 CTB6F2316 265 CTB6F2317 266 CTB6F2318 267 CTB6F2319 268 CTB6F2320 269 CTB6F2321 270 CTB6F2323 271 CTB6F2324 272 CTB6F2326 273 CTB6F2327 274 CTB6F2328 275 CTB6F2329 276 CTB6F2330 277 CTB6F2331 278 CTB6F2332 279 CTB6F2333 280 CTB6F2334 281 CTB6F2335 282 CTB6F2336 283 CTB6F2337 284 CTB6F2338 285 CTB6F2343 286 CTB6F2345 287 CTB6F2346 288 CTB6F2347 289 CTB6F2349 290 CTB6F2353 291 CTB6F2354 292 CTB6F2355 293 CTB6F2359 294 CTB6F2360 295 CTB6F2361 296 CTB6F2362 297 CTB6F2363 298 CTB6F2364 299 CTB6F2366 300 CTB6F2368 301 CTB6F2370 302 CTB6F2371 303 CTB6F2372 304 CTB6F2373 305 CTB6F2375 306 CTB6F2378 307 CTB6F2380 308 CTB6F2381 309 CTB6F2382 310 CTB6F2383 311 CTB6F2384 312 CTB6F2385 313 CTB6F2386 314 CTB6F2387 315 CTB6F2388 316 CTB6F2389 317 CTB6F2390 318 CTB6F2391 319 CTB6F2392 320 CTB6F2394 321 CTB6F2395 322 CTB6F2396 323 CTB6F2397 324 CTB6F2398 325 CTB6F2399 326 CTB6F2400 327 CTB6F2401 328 CTB6F2402 329 CTB6F2403 330 CTB6F2404 331 CTB6F2405 332 CTB6F2406 333 CTB6F2407 334 CTB6F2408 335 CTB6F2410 336 CTB6F2411 337 CTB6F2412 338 CTB6F2413 339 CTB6F2414 340 CTB6F2415 341 CTB6F2416 342 CTB6F2417 343 CTB6F2418 344 CTB6F2419 345 CTB6F2420 346 CTB6F2421 347 CTB6F2422 348 CTB6F2423 349 CTB6F2424 350 CTB6F2425 351 CTB6F2426 352 CTB6F2427 353 CTB6F2428 354 CTB6F2429 355 CTB6F2430 356 CTB6F2431 357 CTB6F2432 358 CTB6F2433 359 CTB6F2434 360 CTB6F2435 361 CTB6F2436 362 CTB6F2437 363 CTB6F2438 364 CTB6F2439 365 CTB6F2440 366 CTB6F2441 367 CTB6F2442 368 CTB6F2443 369 CTB6F2444 370 CTB6F2445 371 CTB6F2446 372 CTB6F2448 373 CTB6F2449 374 CTB6F2450 375 CTB6F2452 376 CTB6F2453 377 CTB6F2454 378 CTB6F2455 379 CTB6F2456 380 CTB6F2457 381 CTB6F2458 382 CTB6F2460 383 CTB6F2461 384 CTB6F2462 385 CTB6F2463 386 CTB6F2464 387 CTB6F2465 388 CTB6F2466 389 CTB6F2468 390 CTB6F2469 391 CTB6F2470 392 CTB6F2471 393 CTB6F2472 394 CTB6F2473 395 CTB6F2474 396 CTB6F2475 397 CTB6F2476 398 CTB6F2477 399 CTB6F2498 400 CTB6F2499 401 CTB6F2500 402 CTB6F2502 403 CTB6F2504 404 CTB6F2506 405 CTB6F2507 406 CTB6F2508 407 CTB6F2509 408 CTB6F2510 409 CTB6F2511 410 CTB6F2512 411 CTB6F2514 412 CTB6F2516 413 CTB6F2518 414 CTB6F2520 415 CTB6F2521 416 CTB6F2522 417 CTB6F2523 418 CTB6F2524 419 CTB6F2525 420 CTB6F2526 421 CTB6F2527 422 CTB6F2528 423 CTB6F2529 424 CTB6F2532 425 CTB6F2533 426 CTB6F2536 427 CTB6F2537 428 CTB6F2538 429 CTB6F2539 430 CTB6F2540 431 CTB6F2541 432 CTB6F2542 433 CTB6F2543 434 CTB6F2544 435 CTB6F2545 436 CTB6F2546 437 CTB6F2547 438 CTB6F2548 439 CTB6F2549 440 CTB6F2550 441 CTB6F2551 442 CTB6F2552