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Trait Data and Analysis  for Record ID 10028675049

  Details and Links

Gene Symbol: Chrna3
Aliases: NM_145129
Description: cholinergic receptor, nicotinic, alpha polypeptide 3
Location: Chr 9 @ 55.011342 Mb
Target Score:
Species and Group: Mouse, CTB6F2
Database 3: UCLA CTB6B6CTF2 Liver Male mlratio
Resource Links: OMIM  UniGene  GenBank  
STRING  ABA  EBI GWAS  Wiki-Pi  

Add To Collection Find similar expression data  Check probe locations at UCSC  Write or review comments about this gene  View SNPs and Indels
AddFindVerifyGeneWikiSNPs

  Basic Statistics



StatisticValue
N of Samples237
Mean0.039
Median0.054
Standard Error (SE)0.024
Standard Deviation (SD)0.376
Minimum-2.000
Maximum2.000

nP_VB8pBF1e.gif


This plot evaluates whether data are normally distributed. Different symbols represent different groups.

More about Normal Probability Plots and more about interpreting these plots from the glossary

Box_JdSDwEMA.gif

More about Box Plots

Bar_pRci8ByQ.gif

Bar_Y0M4SjTA.gif

  Calculate Correlations

Database:
Return:

Pearson    Spearman Rank



The Sample Correlation is computed between trait data and any
other traits in the sample database selected above. Use Spearman Rank
when the sample size is small (<20) or when there are influential outliers.
Database:
Return:



The Literature Correlation (Lit r) between this gene and all other genes is computed
using the Semantic Gene Organizer and human, rat, and mouse data from PubMed.
Values are ranked by Lit r, but Sample r and Tissue r are also displayed.

More on using Lit r
Database:
Return:

Pearson    Spearman Rank



The Tissue Correlation (Tissue r) estimates the similarity of expression of two genes
or transcripts across different cells, tissues, or organs (glossary). Tissue correlations
are generated by analyzing expression in multiple samples usually taken from single cases.
Pearson and Spearman Rank correlations have been computed for all pairs of genes
using data from mouse samples.

  Mapping Tools

Chromosome:
Mapping Scale:
Permutations:

Bootstrap Test (n=2000)
Use Parents
Use Weighted



Interval Mapping computes linkage maps for the entire genome or single
chromosomes. The Permutation Test estimates suggestive and significant
linkage scores. The Bootstrap Test estimates the precision of the QTL location.

Display LRS above:
Permutations:

Display all LRS
Use Parents
Use Weighted



Marker regression computes and displays LRS values for individual markers.
This function also lists additive effects (phenotype units per allele) and
dominance deviations for some datasets.

Chromosome:
Mapping Scale:
Control Locus:
Permutations:

Bootstrap Test (n=2000)
Use Parents



Composite Interval Mapping allows you to control for a single marker as
a cofactor. To find a control marker, run the Marker Regression function.

Sort by:
Return:

Permutation Test (n=500)



Pair-Scan searches for pairs of chromosomal regions that are
involved in two-locus epistatic interactions.

  Review and Edit Data

Edit or delete values in the Trait Data boxes, and use the Reset option as needed.

  Block samples by index:        
  Options:                       


  Outliers highlighted in  yellow  can be hidden using the Hide Outliers button,
  and samples with no value (x) can be hidden by clicking Hide No Value .


IndexSampleValue
1 CTB6F2
2 B6CTF2
3 C57BL/6J
4 Castaneous
5 CTB6F2001
6 CTB6F2002
7 CTB6F2003
8 CTB6F2004
9 CTB6F2005
10 CTB6F2006
11 CTB6F2007
12 CTB6F2008
13 CTB6F2009
14 CTB6F2010
15 CTB6F2011
16 CTB6F2013
17 CTB6F2015
18 CTB6F2016
19 CTB6F2017
20 CTB6F2018
21 CTB6F2019
22 CTB6F2020
23 CTB6F2021
24 CTB6F2022
25 CTB6F2023
26 CTB6F2024
27 CTB6F2025
28 CTB6F2026
29 CTB6F2027
30 CTB6F2028
31 CTB6F2029
32 CTB6F2033
33 CTB6F2034
34 CTB6F2035
35 CTB6F2036
36 CTB6F2039
37 CTB6F2040
38 CTB6F2041
39 CTB6F2042
40 CTB6F2043
41 CTB6F2045
42 CTB6F2046
43 CTB6F2047
44 CTB6F2048
45 CTB6F2049
46 CTB6F2053
47 CTB6F2054
48 CTB6F2055
49 CTB6F2057
50 CTB6F2058
51 CTB6F2059
52 CTB6F2060
53 CTB6F2061
54 CTB6F2062
55 CTB6F2063
56 CTB6F2064
57 CTB6F2065
58 CTB6F2066
59 CTB6F2067
60 CTB6F2068
61 CTB6F2069
62 CTB6F2070
63 CTB6F2071
64 CTB6F2072
65 CTB6F2073
66 CTB6F2074
67 CTB6F2075
68 CTB6F2076
69 CTB6F2077
70 CTB6F2078
71 CTB6F2079
72 CTB6F2080
73 CTB6F2081
74 CTB6F2083
75 CTB6F2085
76 CTB6F2088
77 CTB6F2089
78 CTB6F2090
79 CTB6F2091
80 CTB6F2093
81 CTB6F2094
82 CTB6F2095
83 CTB6F2097
84 CTB6F2098
85 CTB6F2099
86 CTB6F2101
87 CTB6F2104
88 CTB6F2108
89 CTB6F2109
90 CTB6F2111
91 CTB6F2112
92 CTB6F2113
93 CTB6F2114
94 CTB6F2115
95 CTB6F2116
96 CTB6F2117
97 CTB6F2118
98 CTB6F2119
99 CTB6F2120
100 CTB6F2122
101 CTB6F2123
102 CTB6F2126
103 CTB6F2127
104 CTB6F2128
105 CTB6F2129
106 CTB6F2130
107 CTB6F2132
108 CTB6F2133
109 CTB6F2134
110 CTB6F2135
111 CTB6F2137
112 CTB6F2138
113 CTB6F2139
114 CTB6F2140
115 CTB6F2141
116 CTB6F2142
117 CTB6F2144
118 CTB6F2145
119 CTB6F2146
120 CTB6F2147
121 CTB6F2148
122 CTB6F2150
123 CTB6F2151
124 CTB6F2152
125 CTB6F2154
126 CTB6F2155
127 CTB6F2157
128 CTB6F2159
129 CTB6F2160
130 CTB6F2161
131 CTB6F2162
132 CTB6F2163
133 CTB6F2164
134 CTB6F2165
135 CTB6F2167
136 CTB6F2168
137 CTB6F2169
138 CTB6F2170
139 CTB6F2171
140 CTB6F2173
141 CTB6F2174
142 CTB6F2175
143 CTB6F2178
144 CTB6F2179
145 CTB6F2180
146 CTB6F2181
147 CTB6F2182
148 CTB6F2183
149 CTB6F2184
150 CTB6F2185
151 CTB6F2186
152 CTB6F2187
153 CTB6F2188
154 CTB6F2189
155 CTB6F2190
156 CTB6F2191
157 CTB6F2193
158 CTB6F2194
159 CTB6F2196
160 CTB6F2197
161 CTB6F2198
162 CTB6F2199
163 CTB6F2200
164 CTB6F2201
165 CTB6F2202
166 CTB6F2203
167 CTB6F2204
168 CTB6F2205
169 CTB6F2207
170 CTB6F2208
171 CTB6F2210
172 CTB6F2211
173 CTB6F2212
174 CTB6F2213
175 CTB6F2214
176 CTB6F2215
177 CTB6F2216
178 CTB6F2217
179 CTB6F2218
180 CTB6F2220
181 CTB6F2222
182 CTB6F2223
183 CTB6F2224
184 CTB6F2225
185 CTB6F2227
186 CTB6F2228
187 CTB6F2229
188 CTB6F2230
189 CTB6F2231
190 CTB6F2232
191 CTB6F2234
192 CTB6F2235
193 CTB6F2236
194 CTB6F2237
195 CTB6F2238
196 CTB6F2239
197 CTB6F2240
198 CTB6F2241
199 CTB6F2243
200 CTB6F2245
201 CTB6F2246
202 CTB6F2247
203 CTB6F2250
204 CTB6F2252
205 CTB6F2253
206 CTB6F2256
207 CTB6F2257
208 CTB6F2258
209 CTB6F2259
210 CTB6F2260
211 CTB6F2261
212 CTB6F2262
213 CTB6F2263
214 CTB6F2264
215 CTB6F2265
216 CTB6F2266
217 CTB6F2267
218 CTB6F2268
219 CTB6F2269
220 CTB6F2270
221 CTB6F2271
222 CTB6F2272
223 CTB6F2273
224 CTB6F2274
225 CTB6F2275
226 CTB6F2276
227 CTB6F2277
228 CTB6F2278
229 CTB6F2279
230 CTB6F2280
231 CTB6F2281
232 CTB6F2282
233 CTB6F2283
234 CTB6F2284
235 CTB6F2285
236 CTB6F2286
237 CTB6F2287
238 CTB6F2288
239 CTB6F2289
240 CTB6F2290
241 CTB6F2291
242 CTB6F2292
243 CTB6F2293
244 CTB6F2294
245 CTB6F2296
246 CTB6F2297
247 CTB6F2298
248 CTB6F2299
249 CTB6F2300
250 CTB6F2301
251 CTB6F2302
252 CTB6F2303
253 CTB6F2304
254 CTB6F2305
255 CTB6F2306
256 CTB6F2307
257 CTB6F2308
258 CTB6F2309
259 CTB6F2311
260 CTB6F2312
261 CTB6F2313
262 CTB6F2314
263 CTB6F2315
264 CTB6F2316
265 CTB6F2317
266 CTB6F2318
267 CTB6F2319
268 CTB6F2320
269 CTB6F2321
270 CTB6F2323
271 CTB6F2324
272 CTB6F2326
273 CTB6F2327
274 CTB6F2328
275 CTB6F2329
276 CTB6F2330
277 CTB6F2331
278 CTB6F2332
279 CTB6F2333
280 CTB6F2334
281 CTB6F2335
282 CTB6F2336
283 CTB6F2337
284 CTB6F2338
285 CTB6F2343
286 CTB6F2345
287 CTB6F2346
288 CTB6F2347
289 CTB6F2349
290 CTB6F2353
291 CTB6F2354
292 CTB6F2355
293 CTB6F2359
294 CTB6F2360
295 CTB6F2361
296 CTB6F2362
297 CTB6F2363
298 CTB6F2364
299 CTB6F2366
300 CTB6F2368
301 CTB6F2370
302 CTB6F2371
303 CTB6F2372
304 CTB6F2373
305 CTB6F2375
306 CTB6F2378
307 CTB6F2380
308 CTB6F2381
309 CTB6F2382
310 CTB6F2383
311 CTB6F2384
312 CTB6F2385
313 CTB6F2386
314 CTB6F2387
315 CTB6F2388
316 CTB6F2389
317 CTB6F2390
318 CTB6F2391
319 CTB6F2392
320 CTB6F2394
321 CTB6F2395
322 CTB6F2396
323 CTB6F2397
324 CTB6F2398
325 CTB6F2399
326 CTB6F2400
327 CTB6F2401
328 CTB6F2402
329 CTB6F2403
330 CTB6F2404
331 CTB6F2405
332 CTB6F2406
333 CTB6F2407
334 CTB6F2408
335 CTB6F2410
336 CTB6F2411
337 CTB6F2412
338 CTB6F2413
339 CTB6F2414
340 CTB6F2415
341 CTB6F2416
342 CTB6F2417
343 CTB6F2418
344 CTB6F2419
345 CTB6F2420
346 CTB6F2421
347 CTB6F2422
348 CTB6F2423
349 CTB6F2424
350 CTB6F2425
351 CTB6F2426
352 CTB6F2427
353 CTB6F2428
354 CTB6F2429
355 CTB6F2430
356 CTB6F2431
357 CTB6F2432
358 CTB6F2433
359 CTB6F2434
360 CTB6F2435
361 CTB6F2436
362 CTB6F2437
363 CTB6F2438
364 CTB6F2439
365 CTB6F2440
366 CTB6F2441
367 CTB6F2442
368 CTB6F2443
369 CTB6F2444
370 CTB6F2445
371 CTB6F2446
372 CTB6F2448
373 CTB6F2449
374 CTB6F2450
375 CTB6F2452
376 CTB6F2453
377 CTB6F2454
378 CTB6F2455
379 CTB6F2456
380 CTB6F2457
381 CTB6F2458
382 CTB6F2460
383 CTB6F2461
384 CTB6F2462
385 CTB6F2463
386 CTB6F2464
387 CTB6F2465
388 CTB6F2466
389 CTB6F2468
390 CTB6F2469
391 CTB6F2470
392 CTB6F2471
393 CTB6F2472
394 CTB6F2473
395 CTB6F2474
396 CTB6F2475
397 CTB6F2476
398 CTB6F2477
399 CTB6F2498
400 CTB6F2499
401 CTB6F2500
402 CTB6F2502
403 CTB6F2504
404 CTB6F2506
405 CTB6F2507
406 CTB6F2508
407 CTB6F2509
408 CTB6F2510
409 CTB6F2511
410 CTB6F2512
411 CTB6F2514
412 CTB6F2516
413 CTB6F2518
414 CTB6F2520
415 CTB6F2521
416 CTB6F2522
417 CTB6F2523
418 CTB6F2524
419 CTB6F2525
420 CTB6F2526
421 CTB6F2527
422 CTB6F2528
423 CTB6F2529
424 CTB6F2532
425 CTB6F2533
426 CTB6F2536
427 CTB6F2537
428 CTB6F2538
429 CTB6F2539
430 CTB6F2540
431 CTB6F2541
432 CTB6F2542
433 CTB6F2543
434 CTB6F2544
435 CTB6F2545
436 CTB6F2546
437 CTB6F2547
438 CTB6F2548
439 CTB6F2549
440 CTB6F2550
441 CTB6F2551
442 CTB6F2552

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