Details and Links

Gene Symbol:		Chrna3
Aliases:		(a)3; A730007P14Rik; Acra-3; Acra3; MGC104879
Description:		cholinergic receptor, nicotinic, alpha polypeptide 3
Location:		Chr 9 @ 55.010354 Mb on the minus strand
Target Score:
Species and Group:		Mouse, LGSM-AI
Database 3:		UCSD AIL Striatum (Apr18) RNA-Seq
Resource Links:		Gene  OMIM  UniGene  HomoloGene
		UCSC  BioGPS  STRING  PANTHER  Gemma  ABA  EBI GWAS  Wiki-Pi

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  Basic Statistics

Basic Table Probability Plot Bar Graph (by name) Bar Graph (by rank) Box Plot Statistic Value N of Samples 169 Mean 9.606 Median 7.990 Standard Error (SE) 1.123 Standard Deviation (SD) 14.605 Minimum 0.906 Maximum 189.782 Range (log2) 188.876 Range (fold) 7.2e+56 Interquartile Range 47.640 This plot evaluates whether data are normally distributed. Different symbols represent different groups. More about Normal Probability Plots and more about interpreting these plots from the glossary More about Box Plots

  Calculate Correlations

Sample r Literature r Tissue r Database: LGSM AI Phenotypes AIL Genotypes UCSD AIL Hippocampus (Apr18) RNA-Seq Log2 UCSD AIL Hippocampus (Apr18) RNA-Seq UCSD AIL Prefrontal Cortex (Apr18) RNA-Seq Log2 UCSD AIL Prefrontal Cortex (Apr18) RNA-Seq UCSD AIL Striatum (Apr18) RNA-Seq Log2 UCSD AIL Striatum (Apr18) RNA-Seq Return: top 25 top 50 top 100 top 200 top 500 top 1000 top 2000 top 5000 top 10000 top 15000 top 20000 top 30000 top 40000 top 60000 Pearson    Spearman Rank The Sample Correlation is computed between trait data and any other traits in the sample database selected above. Use Spearman Rank when the sample size is small (<20) or when there are influential outliers. Database: LGSM AI Phenotypes AIL Genotypes UCSD AIL Hippocampus (Apr18) RNA-Seq Log2 UCSD AIL Hippocampus (Apr18) RNA-Seq UCSD AIL Prefrontal Cortex (Apr18) RNA-Seq Log2 UCSD AIL Prefrontal Cortex (Apr18) RNA-Seq UCSD AIL Striatum (Apr18) RNA-Seq Log2 UCSD AIL Striatum (Apr18) RNA-Seq Return: top 25 top 50 top 100 top 200 top 500 top 1000 top 2000 top 5000 top 10000 top 15000 top 20000 top 30000 top 40000 top 60000 The Literature Correlation (Lit r) between this gene and all other genes is computed using the Semantic Gene Organizer and human, rat, and mouse data from PubMed. Values are ranked by Lit r, but Sample r and Tissue r are also displayed. More on using Lit r Database: LGSM AI Phenotypes AIL Genotypes UCSD AIL Hippocampus (Apr18) RNA-Seq Log2 UCSD AIL Hippocampus (Apr18) RNA-Seq UCSD AIL Prefrontal Cortex (Apr18) RNA-Seq Log2 UCSD AIL Prefrontal Cortex (Apr18) RNA-Seq UCSD AIL Striatum (Apr18) RNA-Seq Log2 UCSD AIL Striatum (Apr18) RNA-Seq Return: top 25 top 50 top 100 top 200 top 500 top 1000 top 2000 top 5000 top 10000 top 15000 top 20000 top 30000 top 40000 top 60000 Pearson    Spearman Rank The Tissue Correlation (Tissue r) estimates the similarity of expression of two genes or transcripts across different cells, tissues, or organs (glossary). Tissue correlations are generated by analyzing expression in multiple samples usually taken from single cases. Pearson and Spearman Rank correlations have been computed for all pairs of genes using data from mouse samples.

  Mapping Tools

mappingMethodId 2 has not been implemented for this dataset yet.

  Review and Edit Data

Edit or delete values in the Trait Data boxes, and use the Reset option as needed.   Block samples by index:           Options:                          Outliers highlighted in  yellow  can be hidden using the Hide Outliers button,   and samples with no value (x) can be hidden by clicking Hide No Value . 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