Details and Links

Gene Symbol:		Chrna3
Aliases:		(a)3; A730007P14Rik; Acra-3; Acra3; MGC104879
Description:		cholinergic receptor, nicotinic, alpha polypeptide 3
Location:		Chr 9 @ 55.010354 Mb on the minus strand
Target Score:
Species and Group:		Mouse, CFW
Database 3:		UCSD CFW Striatum (Jan17) RNA-Seq Log2 Z-score
Resource Links:		Gene  OMIM  UniGene  HomoloGene
		UCSC  BioGPS  STRING  PANTHER  Gemma  ABA  EBI GWAS  Wiki-Pi

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  Basic Statistics

Basic Table Probability Plot Bar Graph (by name) Bar Graph (by rank) Box Plot Statistic Value N of Samples 55 Mean 6.964 Median 6.927 Standard Error (SE) 0.026 Standard Deviation (SD) 0.191 Minimum 6.729 Maximum 7.928 Range (log2) 1.199 Range (fold) 2.296 Interquartile Range 1.101 This plot evaluates whether data are normally distributed. Different symbols represent different groups. More about Normal Probability Plots and more about interpreting these plots from the glossary More about Box Plots

  Calculate Correlations

Sample r Literature r Tissue r Database: CFW Phenotypes UCSD CFW Hippocampus (Jan17) RNA-Seq Log2 Z-score UCSD CFW Hippocampus RNA-Seq (Jan17) FPKM Quantile UCSD CFW Prefrontal Cortex (Jan17) RNA-Seq Log2 Z-score UCSD CFW Prefrontal Cortex (Jan17) RNA-Seq UCSD CFW Striatum (Jan17) RNA-Seq Log2 Z-score UCSD CFW Striatum (Jan17) RNA-Seq Return: top 25 top 50 top 100 top 200 top 500 top 1000 top 2000 top 5000 top 10000 top 15000 top 20000 top 30000 top 40000 top 60000 Pearson    Spearman Rank The Sample Correlation is computed between trait data and any other traits in the sample database selected above. Use Spearman Rank when the sample size is small (<20) or when there are influential outliers. Database: CFW Phenotypes UCSD CFW Hippocampus (Jan17) RNA-Seq Log2 Z-score UCSD CFW Hippocampus RNA-Seq (Jan17) FPKM Quantile UCSD CFW Prefrontal Cortex (Jan17) RNA-Seq Log2 Z-score UCSD CFW Prefrontal Cortex (Jan17) RNA-Seq UCSD CFW Striatum (Jan17) RNA-Seq Log2 Z-score UCSD CFW Striatum (Jan17) RNA-Seq Return: top 25 top 50 top 100 top 200 top 500 top 1000 top 2000 top 5000 top 10000 top 15000 top 20000 top 30000 top 40000 top 60000 The Literature Correlation (Lit r) between this gene and all other genes is computed using the Semantic Gene Organizer and human, rat, and mouse data from PubMed. Values are ranked by Lit r, but Sample r and Tissue r are also displayed. More on using Lit r Database: CFW Phenotypes UCSD CFW Hippocampus (Jan17) RNA-Seq Log2 Z-score UCSD CFW Hippocampus RNA-Seq (Jan17) FPKM Quantile UCSD CFW Prefrontal Cortex (Jan17) RNA-Seq Log2 Z-score UCSD CFW Prefrontal Cortex (Jan17) RNA-Seq UCSD CFW Striatum (Jan17) RNA-Seq Log2 Z-score UCSD CFW Striatum (Jan17) RNA-Seq Return: top 25 top 50 top 100 top 200 top 500 top 1000 top 2000 top 5000 top 10000 top 15000 top 20000 top 30000 top 40000 top 60000 Pearson    Spearman Rank The Tissue Correlation (Tissue r) estimates the similarity of expression of two genes or transcripts across different cells, tissues, or organs (glossary). Tissue correlations are generated by analyzing expression in multiple samples usually taken from single cases. Pearson and Spearman Rank correlations have been computed for all pairs of genes using data from mouse samples.

  Mapping Tools

mappingMethodId 2 has not been implemented for this dataset yet.

  Review and Edit Data

Edit or delete values in the Trait Data boxes, and use the Reset option as needed.   Block samples by index:           Options:                          Outliers highlighted in  yellow  can be hidden using the Hide Outliers button,   and samples with no value (x) can be hidden by clicking Hide No Value . Index Sample Value 1 26306 2 26307 3 26308 4 26309 5 26310 6 26312 7 26313 8 26314 9 26315 10 26316 11 26317 12 26318 13 26319 14 26320 15 26321 16 26322 17 26323 18 26324 19 26325 20 26326 21 26327 22 26328 23 26329 24 26330 25 26331 26 26332 27 26333 28 26334 29 26335 30 26336 31 26338 32 26339 33 26340 34 26341 35 26342 36 26343 37 26344 38 26345 39 26346 40 26347 41 26348 42 26349 43 26350 44 26354 45 26501 46 26502 47 26503 48 26504 49 26505 50 26506 51 26507 52 26508 53 26509 54 26510 55 26511 56 26512 57 26513 58 26514 59 26515 60 26516 61 26517 62 26518 63 26519 64 26520 65 26521 66 26522 67 26523 68 26524 69 26525 70 26526 71 26527 72 26528 73 26529 74 26530 75 26531 76 26532 77 26533 78 26534 79 26535 80 26536 81 26537 82 26538 83 26539 84 26540 85 26541 86 26542 87 26543 88 26544 89 26545 90 26546 91 26547 92 26548 93 26646 94 26647 95 26648 96 26649 97 26651 98 26652 99 26653 100 26655 101 26657 102 26659 103 26660 104 26661 105 26662 106 26664 107 26665 108 26667 109 26668 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