UTHSC B6D2RI Aged Hippocampus Affy Mouse Gene 1.0 ST (Sep12) RMA : 10593756: Display Trait

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Trait Data and Analysis for Record ID 10593756

Details and Links

Gene Symbol: Chrna3
Aliases: Chrna3; (a)3; A730007P14Rik; Acra-3; Acra3
Description: cholinergic receptor, nicotinic, alpha polypeptide 3
Location: Chr 9 @ 55.006443 Mb on the minus strand
Target Score:
Species and Group: Mouse, B6D2RI
Database 3: UTHSC B6D2RI Aged Hippocampus Affy Mouse Gene 1.0 ST (Sep12) RMA
Resource Links: Gene OMIM HomoloGene
UCSC BioGPS STRING PANTHER Gemma ABA EBI GWAS Wiki-Pi

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Basic Statistics

Include:

Basic Table
Probability Plot
Bar Graph (by name)
Bar Graph (by rank)
Box Plot

Statistic Value
N of Samples 137
Mean 6.649
Median 6.618
Standard Error (SE) 0.020
Standard Deviation (SD) 0.238
Minimum 6.271
Maximum 8.352
Range (log2) 2.081
Range (fold) 4.231
Interquartile Range 1.166

This plot evaluates whether data are normally distributed. Different symbols represent different groups.

More about Normal Probability Plots and more about interpreting these plots from the glossary

More about Box Plots

Basic Table
Probability Plot
Bar Graph (by name)
Bar Graph (by rank)
Box Plot

Statistic Value
N of Samples 127
Mean 6.635
Median 6.610
Standard Error (SE) 0.017
Standard Deviation (SD) 0.191
Minimum 6.271
Maximum 7.286
Range (log2) 1.015
Range (fold) 2.021
Interquartile Range 1.166

This plot evaluates whether data are normally distributed. Different symbols represent different groups.

More about Normal Probability Plots and more about interpreting these plots from the glossary

More about Box Plots

Basic Table
Probability Plot
Bar Graph (by name)
Bar Graph (by rank)
Box Plot

Statistic Value
N of Samples 10
Mean 6.831
Median 6.728
Standard Error (SE) 0.174
Standard Deviation (SD) 0.551
Minimum 6.373
Maximum 8.352
Range (log2) 1.979
Range (fold) 3.942
Interquartile Range 1.153

This plot evaluates whether data are normally distributed. Different symbols represent different groups.

More about Normal Probability Plots and more about interpreting these plots from the glossary

More about Box Plots

Calculate Correlations

Sample r
Literature r
Tissue r

Database:
Return:
Samples:

Pearson Spearman Rank

The Sample Correlation is computed between trait data and any
other traits in the sample database selected above. Use Spearman Rank
when the sample size is small (<20) or when there are influential outliers.
Database:
Return:
Samples:

The Literature Correlation (Lit r) between this gene and all other genes is computed
using the Semantic Gene Organizer and human, rat, and mouse data from PubMed.
Values are ranked by Lit r, but Sample r and Tissue r are also displayed.

More on using Lit r
Database:
Return:
Samples:

Pearson Spearman Rank

The Tissue Correlation (Tissue r) estimates the similarity of expression of two genes
or transcripts across different cells, tissues, or organs (glossary). Tissue correlations
are generated by analyzing expression in multiple samples usually taken from single cases.
Pearson and Spearman Rank correlations have been computed for all pairs of genes
using data from mouse samples.

Mapping Tools

Interval
Marker Regression
Composite
Pair-Scan

Chromosome:
Mapping Scale:
Permutations:

Bootstrap Test (n=2000)
Use Parents
Use Weighted

Interval Mapping computes linkage maps for the entire genome or single
chromosomes. The Permutation Test estimates suggestive and significant
linkage scores. The Bootstrap Test estimates the precision of the QTL location.
Display LRS above:
Permutations:

Display all LRS
Use Parents
Use Weighted

Marker regression computes and displays LRS values for individual markers.
This function also lists additive effects (phenotype units per allele) and
dominance deviations for some datasets.

Chromosome:
Mapping Scale:
Control Locus:
Permutations:

Bootstrap Test (n=2000)
Use Parents

Composite Interval Mapping allows you to control for a single marker as
a cofactor. To find a control marker, run the Marker Regression function.
Sort by:
Return:

Permutation Test (n=500)

Pair-Scan searches for pairs of chromosomal regions that are
involved in two-locus epistatic interactions.

Review and Edit Data

Edit or delete values in the Trait Data boxes, and use the Reset option as needed.
  Block samples by index:
  Block samples by group:


  Options:

  Outliers highlighted in yellow can be hidden using the Hide Outliers button,
  and samples with no value (x) can be hidden by clicking Hide No Value .

Index Sample Value Status Sex Age Sample Batch RRID Epoch SeqCvge
1 BXD1_1 M 323 R7276H 1 JAX:000036 1 36.03
2 BXD1_2 F 448 R7281H 1 JAX:000036 1 36.03
3 BXD1_3 F 477 051209.20 2 JAX:000036 1 36.03
4 BXD2_1 M 394 R7261H 1 JAX:000075 1 40.44
5 BXD2_2 F 456 R7256H 1 JAX:000075 1 40.44
6 BXD2_3 M 483 022807.04 2 JAX:000075 1 40.44
7 BXD2_4 M 609 042909.46 2 JAX:000075 1 40.44
8 BXD2_5 F 609 042909.47 2 JAX:000075 1 40.44
9 BXD6_1 M 526 R7223H 1 JAX:000007 1 32.01
10 BXD6_2 JAX:000007 1 32.01
11 BXD8_1 F 433 R7198H 1 JAX:000084 1 36.63
12 BXD8_2 F 460 R7200H 1 JAX:000084 1 36.63
13 BXD8_3 M 471 R7203H 1 JAX:000084 1 36.63
14 BXD9_1 F 456 R7294H 1 JAX:000105 1 38.14
15 BXD9_2 M 631 052008.17 2 JAX:000105 1 38.14
16 BXD9_3 M 631 052008.18 2 JAX:000105 1 38.14
17 BXD11_1 M 457 R7300H 1 JAX:000012 1 42.34
18 BXD11_2 F 536 R7227H 1 JAX:000012 1 42.34
19 BXD11_3 F 741 021113.01 2 JAX:000012 1 42.34
20 BXD11_4 F 741 021113.02 2 JAX:000012 1 42.34
21 BXD12_1 F 506 R7183H 1 JAX:000045 1 42.48
22 BXD12_2 F 561 R7233H 1 JAX:000045 1 42.48
23 BXD12_3 M 606 R7234H 1 JAX:000045 1 42.48
24 BXD12_4 F 850 020409.01 2 JAX:000045 1 42.48
25 BXD12_5 M 850 020409.03 2 JAX:000045 1 42.48
26 BXD14_1 F 605 R7238H 1 JAX:000329 1 39.91
27 BXD14_2 M 605 R7235H 1 JAX:000329 1 39.91
28 BXD15_1 JAX:000095 1 38.92
29 BXD15_2 JAX:000095 1 38.92
30 BXD16_1 F 455 022807.11 2 JAX:000013 1 37.36
31 BXD16_2 M 475 R7239H 1 JAX:000013 1 37.36
32 BXD16_3 F 561 R7236H 1 JAX:000013 1 37.36
33 BXD18_1 F 493 R7229H 1 JAX:000015 1 35.24
34 BXD18_2 F 548 020409.28 2 JAX:000015 1 35.24
35 BXD19_1 M 492 R7268H 1 JAX:000010 1 36.00
36 BXD19_2 F 551 R7267H 1 JAX:000010 1 36.00
37 BXD20_1 M 489 R7263H 1 JAX:000330 1 43.21
38 BXD20_2 M 506 R7232H 1 JAX:000330 1 43.21
39 BXD21_1 F 537 R7230H 1 JAX:000077 1 41.28
40 BXD22_1 F 502 R7260H 1 JAX:000043 1 36.89
41 BXD22_2 M 596 R7262H 1 JAX:000043 1 36.89
42 BXD22_3 F 675 020409.08 2 JAX:000043 1 36.89
43 BXD23_1 M 462 R7257H 1 JAX:000098 1
44 BXD23_2 F 502 R7258H 1 JAX:000098 1
45 BXD23_3 M 512 020107.15 2 JAX:000098 1
46 BXD24_1 F 415 R7228H 1 JAX:000031 1 35.51
47 BXD24_2 F 456 R7255H 1 JAX:000031 1 35.51
48 BXD24_3 M 470 R7231H 1 JAX:000031 1 35.51
49 BXD24_4 F 636 020409.21 2 JAX:000031 1 35.51
50 BXD24_5 F 639 020409.29 2 JAX:000031 1 35.51
51 BXD25_1 F 430 052008.36 2 JAX:000081 1
52 BXD25_2 F 454 R7252H 1 JAX:000081 1
53 BXD25_3 M 709 052008.115 2 JAX:000081 1
54 BXD27_1 F 472 R7286H 1 JAX:000041 1 38.69
55 BXD27_2 F 472 R7170H 1 JAX:000041 1 38.69
56 BXD28_1 M 493 R7254H 1 JAX:000047 1 35.03
57 BXD28_2 F 543 R7251H 1 JAX:000047 1 35.03
58 BXD28_3 M 605 020107.18 2 JAX:000047 1 35.03
59 BXD29_1 F 483 R7259H 1 JAX:010981 1 40.15
60 BXD29_2 JAX:010981 1 40.15
61 BXD31_1 F 445 040109.92 2 JAX:000083 1b 40.03
62 BXD31_2 F 467 031407.18 2 JAX:000083 1b 40.03
63 BXD31_3 F 648 020409.31 2 JAX:000083 1b 40.03
64 BXD32_1 M 566 042909.71 2 JAX:000078 1c 38.25
65 BXD32_2 JAX:000078 1c 38.25
66 BXD33_1 F 448 R7244H 1 JAX:003222 2 38.90
67 BXD33_2 M 464 R7253H 1 JAX:003222 2 38.90
68 BXD33_3 F 471 R7174H 1 JAX:003222 2 38.90
69 BXD33_4 M 662 R7270H 1 JAX:003222 2 38.90
70 BXD33_5 F 683 040109.79 2 JAX:003222 2 38.90
71 BXD34_1 F 414 050609.35 2 JAX:003223 2 40.19
72 BXD34_2 F 549 052008.51 2 JAX:003223 2 40.19
73 BXD34_3 F 554 101513.06 2 JAX:003223 2 40.19
74 BXD34_4 F 748 101513.07 2 JAX:003223 2 40.19
75 BXD38_1 M 446 R7247H 1 JAX:003227 2 40.88
76 BXD38_2 M 446 R7247H 1 JAX:003227 2 40.88
77 BXD38_3 F 464 R7242H 1 JAX:003227 2 40.88
78 BXD38_4 M 530 020107.25 2 JAX:003227 2 40.88
79 BXD39_1 F 500 R7173H 1 JAX:003228 2 30.27
80 BXD39_2 M 500 R7175H 1 JAX:003228 2 30.27
81 BXD39_3 M 536 R7250H 1 JAX:003228 2 30.27
82 BXD39_4 F 661 020409.19 2 JAX:003228 2 30.27
83 BXD40_1 F 451 R7288H 1 JAX:003229 2 39.97
84 BXD40_2 F 451 051209.56 2 JAX:003229 2 39.97
85 BXD40_3 M 470 R7210H 1 JAX:003229 2 39.97
86 BXD40_4 M 614 R7197H 1 JAX:003229 2 39.97
87 BXD40_5 F 633 042909.19 2 JAX:003229 2 39.97
88 BXD40_6 F 728 020409.73 2 JAX:003229 2 39.97
89 BXD42_1 M 446 R7246H 1 JAX:003230 2 38.17
90 BXD42_2 F 486 R7266H 1 JAX:003230 2 38.17
91 BXD42_3 F 518 R7280H 1 JAX:003230 2 38.17
92 BXD43_1 F 454 R7249H 1 JAX:007093 3a 39.54
93 BXD43_2 M 462 R7248H 1 JAX:007093 3a 39.54
94 BXD43_3 M 616 050609.76 2 JAX:007093 3a 39.54
95 BXD44_1 M 415 R7241H 1 JAX:007094 3a 38.66
96 BXD44_2 M 419 R7279H 1 JAX:007094 3a 38.66
97 BXD44_3 F 438 R7243H 1 JAX:007094 3a 38.66
98 BXD44_4 F 564 042607.13 2 JAX:007094 3a 38.66
99 BXD44_5 F 564 042607.14 2 JAX:007094 3a 38.66
100 BXD45_1 F 451 R7176H 1 JAX:007096 3a 33.75
101 BXD45_2 M 631 040109.88 2 JAX:007096 3a 33.75
102 BXD48_1 F 499 R7245H 1 JAX:007097 3a 38.19
103 BXD48_2 M 526 R7220H 1 JAX:007097 3a 38.19
104 BXD48_3 M 740 051209.29 2 JAX:007097 3a 38.19
105 BXD48_4 F 740 101513.10 2 JAX:007097 3a 38.19
106 BXD48a_1 F 479 R7299H 1 JAX:007139 3a 40.47
107 BXD48a_2 M 479 R7297H 1 JAX:007139 3a 40.47
108 BXD48a_3 F 479 051209.01 2 JAX:007139 3a 40.47
109 BXD48a_4 M 479 051209.03 2 JAX:007139 3a 40.47
110 BXD48a_5 F 608 051209.52 2 JAX:007139 3a 40.47
111 BXD48a_6 M 748 051209.65 2 JAX:007139 3a 40.47
112 BXD50_1 F 530 R7224H 1 JAX:007099 3a 40.19
113 BXD50_2 M 530 R7221H 1 JAX:007099 3a 40.19
114 BXD50_3 F 778 050609.04 2 JAX:007099 3a 40.19
115 BXD51_1 F 487 R7177H 1 JAX:007100 3a 41.10
116 BXD51_2 M 407 R7290H 1 JAX:007100 3a 41.10
117 BXD51_3 M 621 041709.11 2 JAX:007100 3a 41.10
118 BXD55_1 M 528 R7222H 1 JAX:007103 3a 39.65
119 BXD55_2 F 587 R7225H 1 JAX:007103 3a 39.65
120 BXD55_3 F 778 052008.134 2 JAX:007103 3a 39.65
121 BXD55_4 F 766 052008.135 2 JAX:007103 3a 39.65
122 BXD56_1 M 501 R7178H 1 JAX:007104 3a 40.37
123 BXD56_2 M 694 051209.66 2 JAX:007104 3a 40.37
124 BXD56_3 F 734 052008.139 2 JAX:007104 3a 40.37
125 BXD60_1 M 457 042909.52 2 JAX:007105 3b 42.32
126 BXD60_2 F 759 101513.14 2 JAX:007105 3b 42.32
127 BXD61_1 M 650 052008.63 2 JAX:007106 3b 39.94
128 BXD61_2 F 702 020409.14 2 JAX:007106 3b 39.94
129 BXD62_1 F 353 121214.20 2 JAX:007107 3b 41.19
130 BXD62_2 M 439 R7291H 1 JAX:007107 3b 41.19
131 BXD62_3 F 699 040109.91 2 JAX:007107 3b 41.19
132 BXD63_1 M 438 R7218H 1 JAX:007108 3b 37.61
133 BXD63_2 F 475 R7215H 1 JAX:007108 3b 37.61
134 BXD63_3 M 972 050609.28 2 JAX:007108 3b 37.61
135 BXD64_1 M 528 R7219H 1 JAX:007109 3b 41.04
136 BXD64_2 F 587 R7216H 1 JAX:007109 3b 41.04
137 BXD65_1 F 425 R7217H 1 JAX:007110 3b 39.08
138 BXD65_2 M 601 050609.39 2 JAX:007110 3b 39.08
139 BXD65_3 F 808 052008.67 2 JAX:007110 3b 39.08
140 BXD65a_1 F 389 R7273H 1 JAX:007140 3b 39.25
141 BXD65a_2 M 715 R7277H 1 JAX:007140 3b 39.25
142 BXD65a_3 F 536 061407.15 2 JAX:007140 3b 39.25
143 BXD65a_4 F 536 061407.16 2 JAX:007140 3b 39.25
144 BXD65b_1 M 483 R7271H 1 JAX:009677 3b 37.21
145 BXD66_1 F 446 R7302H 1 JAX:007111 3b 33.40
146 BXD66_2 M 463 R7214H 1 JAX:007111 3b 33.40
147 BXD66_3 M 557 042507.19 2 JAX:007111 3b 33.40
148 BXD66_4 F 557 042507.20 2 JAX:007111 3b 33.40
149 BXD67_1 F 415 R7278H 1 JAX:007112 3b 39.15
150 BXD67_2 M 425 R7213H 1 JAX:007112 3b 39.15
151 BXD67_3 F 499 R7240H 1 JAX:007112 3b 39.15
152 BXD67_4 F 606 042607.11 2 JAX:007112 3b 39.15
153 BXD67_5 F 649 052008.71 2 JAX:007112 3b 39.15
154 BXD68_1 F 415 R7211H 1 JAX:007113 3b 36.51
155 BXD68_2 M 421 R7212H 1 JAX:007113 3b 36.51
156 BXD68_3 F 623 042607.27 2 JAX:007113 3b 36.51
157 BXD68_4 F 623 042607.28 2 JAX:007113 3b 36.51
158 BXD69_1 F 504 R7305H 1 JAX:007114 3b 38.88
159 BXD69_2 F 558 061913.13 2 JAX:007114 3b 38.88
160 BXD69_3 F 602 112707.08 2 JAX:007114 3b 38.88
161 BXD70_1 F 458 R7207H 1 JAX:007115 3b 38.70
162 BXD70_2 M 460 R7204H 1 JAX:007115 3b 38.70
163 BXD70_3 F 761 042909.28 2 JAX:007115 3b 38.70
164 BXD70_4 F 761 042909.29 2 JAX:007115 3b 38.70
165 BXD71_1 M 471 R7205H 1 JAX:007116 3b 41.12
166 BXD71_2 F 474 R7208H 1 JAX:007116 3b 41.12
167 BXD71_3 F 701 020409.11 2 JAX:007116 3b 41.12
168 BXD71_4 F 582 020409.49 2 JAX:007116 3b 41.12
169 BXD73_1 F 470 R7209H 1 JAX:007117 3b 33.43
170 BXD73_2 M 464 R7206H 1 JAX:007117 3b 33.43
171 BXD73_3 F 544 011007.16 2 JAX:007117 3b 33.43
172 BXD73_4 F 642 052008.81 2 JAX:007117 3b 33.43
173 BXD73a_1 F 443 R7181H 1 JAX:007124 3b 35.86
174 BXD73a_2 F 443 061407.18 2 JAX:007124 3b 35.86
175 BXD73a_3 M 614 R7182H 1 JAX:007124 3b 35.86
176 BXD73a_4 M 710 052008.86 2 JAX:007124 3b 35.86
177 BXD74_1 M 804 031407.10 2 JAX:007118 3b 34.42
178 BXD74_2 JAX:007118 3b 34.42
179 BXD75_1 F 535 011107.08 2 JAX:007119 3b 39.44
180 BXD75_2 JAX:007119 3b 39.44
181 BXD76_1 F 408 R7188H 1 3b
182 BXD76_2 M 564 R7187H 1 3b
183 BXD76_3 M 579 R7179H 1 3b
184 BXD77_1 M 347 R7292H 1 JAX:007121 3b 40.41
185 BXD77_2 F 454 R7201H 1 JAX:007121 3b 40.41
186 BXD77_3 F 659 052008.83 2 JAX:007121 3b 40.41
187 BXD79_1 M 485 R7202H 1 JAX:007123 3b 36.47
188 BXD79_2 F 515 R7199H 1 JAX:007123 3b 36.47
189 BXD79_3 M 704 R7298H 1 JAX:007123 3b 36.47
190 BXD81_1 F 434 050609.25 2 JAX:007125 3b 33.74
191 BXD81_2 F 458 R7190H 1 JAX:007125 3b 33.74
192 BXD81_3 M 515 R7196H 1 JAX:007125 3b 33.74
193 BXD83_1 M 441 R7184H 1 JAX:007126 3b 37.79
194 BXD83_2 F 612 061307.30 2 JAX:007126 3b 37.79
195 BXD83_3 M 617 121907.10 2 JAX:007126 3b 37.79
196 BXD84_1 M 474 R7195H 1 JAX:007127 3b 41.48
197 BXD84_2 M 484 R7296H 1 JAX:007127 3b 41.48
198 BXD84_3 F 522 R7192H 1 JAX:007127 3b 41.48
199 BXD84_4 F 564 020409.80 2 JAX:007127 3b 41.48
200 BXD84_5 F 592 112707.12 2 JAX:007127 3b 41.48
201 BXD85_1 M 425 R7272H 1 JAX:007128 3b 41.39
202 BXD85_2 F 506 R7193H 1 JAX:007128 3b 41.39
203 BXD85_3 F 702 020409.12 2 JAX:007128 3b 41.39
204 BXD85_4 F 702 020409.13 2 JAX:007128 3b 41.39
205 BXD86_1 M 425 R7191H 1 JAX:007129 3b 41.77
206 BXD86_2 F 613 020409.35 2 JAX:007129 3b 41.77
207 BXD86_3 F 613 020409.36 2 JAX:007129 3b 41.77
208 BXD87_1 F 425 R7194H 1 JAX:007130 3b 39.90
209 BXD87_2 M 478 R7303H 1 JAX:007130 3b 39.90
210 BXD87_3 M 442 R7186H 1 JAX:007130 3b 39.90
211 BXD87_4 F 666 052008.97 2 JAX:007130 3b 39.90
212 BXD87_5 M 666 052008.98 2 JAX:007130 3b 39.90
213 BXD89_1 F 446 R7295H 1 JAX:007132 3b 41.79
214 BXD89_2 M 616 052008.10 2 JAX:007132 3b 41.79
215 BXD90_1 M 434 R7287H 1 JAX:007133 3b 38.19
216 BXD90_2 M 558 R7293H 1 JAX:007133 3b 38.19
217 BXD90_3 F 452 052008.105 2 JAX:007133 3b 38.19
218 BXD92_1
219 BXD92_2
220 BXD95_1 F 467 R7180H 1 JAX:007138 3b 32.16
221 BXD95_2 M 467 R7169H 1 JAX:007138 3b 32.16
222 BXD95_3 F 536 100914.09 2 JAX:007138 3b 32.16
223 BXD96_1
224 BXD96_2
225 BXD97_1
226 BXD97_2
227 BXD98_1 M 605 R7237H 1 JAX:007141 3b 37.73
228 BXD98_2 F 639 R7171H 1 JAX:007141 3b 37.73
229 BXD98_3 F 488 R7275H 1 JAX:007141 3b 37.73
230 BXD99_1 M 524 R7189H 1 JAX:007142 3b 38.71
231 BXD99_2 F 471 R7172H 1 JAX:007142 3b 38.71
232 BXD100_1 F 463 R7282H 1 JAX:007143 3b 40.05
233 BXD100_2 M 507 R7283H 1 JAX:007143 3b 40.05
234 BXD100_3 M 577 R7274H 1 JAX:007143 3b 40.05
235 BXD100_4 F 464 R7226H 1 JAX:007143 3b 40.05
236 BXD100_5 M 577 051209.62 2 JAX:007143 3b 40.05
237 BXD101
238 BXD101_1 F 490 R7284H 1 JAX:007144 3b 28.89
239 BXD101_2 M 408 R7285H 1 JAX:007144 3b 28.89
240 BXD101_3 F 223 051112.10 2 JAX:007144 3b 28.89
241 BXD102
242 BXD103
243 BXD201
244 BXD202
245 BXD203
246 BXD204

Index Sample Value Status Sex Age Sample Batch RRID Epoch SeqCvge
1 C57BL/6J_1 M 489 R7264H 1 JAX:000664 69.14
2 C57BL/6J_2 F 650 052008.03 2 JAX:000664 69.14
3 C57BL/6J_3 M 756 R7289H 1 JAX:000664 69.14
4 C57BL/6J_4 M 756 052008.01 2 JAX:000664 69.14
5 D2B6F1_1 M 492 R7265H 1
6 D2B6F1_2 F 495 R7304H 1
7 DBA/2J_1 M 367 R7269H 1 JAX:000671 107.80
8 DBA/2J_2 F 433 R7185H 1 JAX:000671 107.80
9 DBA/2J_3 F 566 R7301H 1 JAX:000671 107.80
10 DBA/2J_4 JAX:000671 107.80

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