Details and Links

Gene Symbol:		CHRNA3
Aliases:		LNCR2; MGC104879; PAOD2
Description:		cholinergic receptor, nicotinic, alpha 3
Location:		Chr 15 @ 78.888092 Mb on the minus strand
Target Score:		BLAT specificity: 1.2   Score: 50
Species and Group:		Human, CEPH-2004
Database 3:		UTHSC CEPH B-cells Illumina (Sep09) RankInv
Resource Links:		Gene  OMIM  HomoloGene
		BioGPS  STRING  PANTHER  Gemma  ABA  EBI GWAS  Wiki-Pi

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  Basic Statistics

Basic Table Probability Plot Bar Graph (by name) Bar Graph (by rank) Box Plot Statistic Value N of Samples 180 Mean 7.045 Median 7.041 Standard Error (SE) 0.007 Standard Deviation (SD) 0.098 Minimum 6.798 Maximum 7.334 Range (log2) 0.536 Range (fold) 1.450 Interquartile Range 1.085 This plot evaluates whether data are normally distributed. Different symbols represent different groups. More about Normal Probability Plots and more about interpreting these plots from the glossary More about Box Plots

  Calculate Correlations

Sample r Literature r Tissue r Database: UTHSC CEPH B-cells Illumina (Sep09) RankInv Monks CEPH B-cells Agilent (Dec04) Log10Ratio Return: top 25 top 50 top 100 top 200 top 500 top 1000 top 2000 top 5000 top 10000 top 15000 top 20000 top 30000 top 40000 top 60000 Pearson    Spearman Rank The Sample Correlation is computed between trait data and any other traits in the sample database selected above. Use Spearman Rank when the sample size is small (<20) or when there are influential outliers. Database: UTHSC CEPH B-cells Illumina (Sep09) RankInv Monks CEPH B-cells Agilent (Dec04) Log10Ratio Return: top 25 top 50 top 100 top 200 top 500 top 1000 top 2000 top 5000 top 10000 top 15000 top 20000 top 30000 top 40000 top 60000 The Literature Correlation (Lit r) between this gene and all other genes is computed using the Semantic Gene Organizer and human, rat, and mouse data from PubMed. Values are ranked by Lit r, but Sample r and Tissue r are also displayed. More on using Lit r Database: UTHSC CEPH B-cells Illumina (Sep09) RankInv Monks CEPH B-cells Agilent (Dec04) Log10Ratio Return: top 25 top 50 top 100 top 200 top 500 top 1000 top 2000 top 5000 top 10000 top 15000 top 20000 top 30000 top 40000 top 60000 Pearson    Spearman Rank The Tissue Correlation (Tissue r) estimates the similarity of expression of two genes or transcripts across different cells, tissues, or organs (glossary). Tissue correlations are generated by analyzing expression in multiple samples usually taken from single cases. Pearson and Spearman Rank correlations have been computed for all pairs of genes using data from mouse samples.

  Mapping Tools

Mapping options are disabled for data not matched with genotypes.

  Review and Edit Data

Edit or delete values in the Trait Data boxes, and use the Reset option as needed.   Block samples by index:           Options:                          Outliers highlighted in  yellow  can be hidden using the Hide Outliers button,   and samples with no value (x) can be hidden by clicking Hide No Value . Index Sample Value 1 1333001 2 1333002 3 1333003 4 1333004 5 1333005 6 1333006 7 1333007 8 1333008 9 1333009 10 1333010 11 1333011 12 1333012 13 1333013 14 1333014 15 1333015 16 1334001 17 1334003 18 1334008 19 1334009 20 1334011 21 1334012 22 1334013 23 1340002 24 1340003 25 1340005 26 1340006 27 1340007 28 1340008 29 1340010 30 1340011 31 1340012 32 1340013 33 1341001 34 1341002 35 1341003 36 1341004 37 1341005 38 1341006 39 1341007 40 1341008 41 1341009 42 1341010 43 1341011 44 1341012 45 1341013 46 1341014 47 1345001 48 1345002 49 1345004 50 1345005 51 1345006 52 1345007 53 1345008 54 1345009 55 1345012 56 1345013 57 1346001 58 1346002 59 1346003 60 1346004 61 1346005 62 1346006 63 1346007 64 1346008 65 1346009 66 1346010 67 1346011 68 1346012 69 1346013 70 1346014 71 1347001 72 1347002 73 1347003 74 1347004 75 1347005 76 1347006 77 1347008 78 1347009 79 1347010 80 1347011 81 1347012 82 1347013 83 1347014 84 1347015 85 1347016 86 1349001 87 1349002 88 1349003 89 1349004 90 1349005 91 1349006 92 1349007 93 1349008 94 1349009 95 1349010 96 1349011 97 1349014 98 1350002 99 1350003 100 1350005 101 1350007 102 1350008 103 1350009 104 1350010 105 1350011 106 1350012 107 1350013 108 1358001 109 1358002 110 1358003 111 1358006 112 1358007 113 1358008 114 1358009 115 1358011 116 1358012 117 1358014 118 1358015 119 1362001 120 1362002 121 1362003 122 1362004 123 1362005 124 1362006 125 1362007 126 1362008 127 1362009 128 1362010 129 1362011 130 1362012 131 1362013 132 1362014 133 1362015 134 1362016 135 1362017 136 1375001 137 1375002 138 1375003 139 1375005 140 1375006 141 1375007 142 1375008 143 1375011 144 1375012 145 1375013 146 1377001 147 1377002 148 1377003 149 1377004 150 1377005 151 1377008 152 1377010 153 1377011 154 1377012 155 1377013 156 1408002 157 1408003 158 1408004 159 1408005 160 1408006 161 1408007 162 1408008 163 1408009 164 1408010 165 1408012 166 1408013 167 1408014 168 1416001 169 1416002 170 1416003 171 1416004 172 1416006 173 1416007 174 1416008 175 1416009 176 1416010 177 1416011 178 1416012 179 1416013 180 1416014 181 1416015 182 1416016 183 1418002 184 1418003 185 1418004 186 1418005 187 1418006 188 1418007 189 1418008 190 1418009 191 1418010 192 1418011 193 1418012 194 1418013 195 1418014 196 1421001 197 1421002 198 1421003 199 1421004 200 1421005 201 1421007 202 1421008 203 1421009 204 1421010 205 1421011 206 1421012 207 1421013 208 1421014 209 1423004 210 1423005 211 1423006 212 1423007 213 1423008 214 1423009 215 1423010 216 1423011 217 1423013 218 1423014 219 1423015 220 1424001 221 1424002 222 1424003 223 1424004 224 1424005 225 1424006 226 1424007 227 1424008 228 1424009 229 1424010 230 1424011 231 1424012 232 1424013 233 1424014 234 1447001 235 1447003 236 1447005 237 1447007 238 1447008 239 1447009 240 1447010 241 1447011 242 1447012 243 1447013 244 1447014 245 1451001 246 1451002 247 1451003 248 1451004 249 1451005 250 1451006 251 1451007 252 1451008 253 1451009 254 1451010 255 1451012 256 1451013 257 1454001 258 1454003 259 1454004 260 1454005 261 1454006 262 1454008 263 1454009 264 1454010 265 1454011 266 1454012 267 1454013 268 1454014 269 1454015 270 1454016 271 1456001 272 1456002 273 1456003 274 1456005 275 1456006 276 1456007 277 1456008 278 1456009 279 1456010 280 1456012 281 1477001 282 1477002 283 1477003 284 1477004 285 1477005 286 1477007 287 1477008 288 1477009 289 1477011 290 1477012 291 1477013 292 1477014