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Data Set Group: UTHSC BXD Aged Hippocampus Affy Mouse Gene 1.0 ST (Sep12) modify this page

Data Set: UTHSC BXD Aged Hippocampus Affy MoGene1.0 ST (May15) RMA Gene Level ** modify this page
GN Accession: GN711
GEO Series: No Geo series yet
Title:
Organism: Mouse (mm10)
Group: BXD
Tissue: Hippocampus mRNA
Dataset Status: Private
Platforms: Affy Mouse Gene 1.0 ST (GPL6246)
Normalization: RMA
Contact Information
Lu Lu
University of Tennessee Health Science Center
71 S. Manassas, Room 410K
Memphis, TN 38163 USA
Tel. 901 448-7557
lulu@uthsc.edu
Website
Download datasets and supplementary data files

Specifics of this Data Set:
UTHSC BXD Aged Hippocampus Affy MoGene1.0 ST (May15) RMA Gene Level **

Summary:


About the cases used to generate this set of data:

The study includes 137 mice (11~25 months old) from 73 strains (B6, D2, DBF1, and 70 BXD strains). All procedures were approved by the UTHSC Institutional Animal Care and Use Committee.

The table of samples that are finally used for this study:

Index Strain Sex RNA ID Age Phase Tissue
1 BXD1 F R7281H 448 II Hippocampus
2 BXD1 M R7276H 323 II Hippocampus
3 BXD2 M R7261H 394 I Hippocampus
4 BXD2 F R7256H 456 I Hippocampus
5 BXD6 M R7223H 526 I Hippocampus
6 BXD8 M R7203H 471 I Hippocampus
7 BXD8 F R7200H 460 I Hippocampus
8 BXD8 F R7198H 433 I Hippocampus
9 BXD9 F R7294H 456 II Hippocampus
10 BXD11 M R7300H 457 II Hippocampus
11 BXD11 F R7227H 536 I Hippocampus
12 BXD12 F R7183H 506 I Hippocampus
13 BXD12 F R7233H 561 I Hippocampus
14 BXD12 M R7234H 606 I Hippocampus
15 BXD14 F R7238H 605 I Hippocampus
16 BXD14 M R7235H 605 I Hippocampus
17 BXD16 F R7236H 561 I Hippocampus
18 BXD16 M R7239H 475 I Hippocampus
19 BXD18 F R7229H 493 I Hippocampus
20 BXD19 F R7267H 551 I Hippocampus
21 BXD19 M R7268H 492 I Hippocampus
22 BXD20 M R7232H 506 I Hippocampus
23 BXD20 M R7263H 489 I Hippocampus
24 BXD21 F R7230H 537 I Hippocampus
25 BXD22 F R7260H 502 I Hippocampus
26 BXD22 M R7262H 596 I Hippocampus
27 BXD23 F R7258H 502 I Hippocampus
28 BXD23 M R7257H 462 I Hippocampus
29 BXD24 M R7231H 470 I Hippocampus
30 BXD24 F R7228H 415 I Hippocampus
31 BXD24 F R7255H 456 I Hippocampus
32 BXD25 F R7252H 454 I Hippocampus
33 BXD27 F R7286H 472 II Hippocampus
34 BXD27 F R7170H 472 I Hippocampus
35 BXD28 M R7254H 493 I Hippocampus
36 BXD28 F R7251H 543 I Hippocampus
37 BXD29 F R7259H 483 I Hippocampus
38 BXD33 M R7253H 464 I Hippocampus
39 BXD33 F R7174H 471 I Hippocampus
40 BXD33 F R7244H 448 I Hippocampus
41 BXD33 M R7270H 662 I Hippocampus
42 BXD38 F R7242H 464 I Hippocampus
43 BXD38 M R7247H 446 I Hippocampus
44 BXD39 M R7250H 536 I Hippocampus
45 BXD39 F R7173H 500 I Hippocampus
46 BXD39 M R7175H 500 I Hippocampus
47 BXD40 F R7288H 451 II Hippocampus
48 BXD40 M R7210H 470 I Hippocampus
49 BXD40 M R7197H 614 I Hippocampus
50 BXD42 F R7280H 518 II Hippocampus
51 BXD42 M R7246H 446 I Hippocampus
52 BXD42 F R7266H 486 I Hippocampus
53 BXD43 F R7249H 454 I Hippocampus
54 BXD43 M R7248H 462 I Hippocampus
55 BXD44 M R7241H 415 I Hippocampus
56 BXD44 M R7279H 419 II Hippocampus
57 BXD44 F R7243H 438 I Hippocampus
58 BXD45 F R7176H 451 I Hippocampus
59 BXD48 F R7245H 499 I Hippocampus
60 BXD48 M R7220H 526 I Hippocampus
61 BXD48a F R7299H 479 II Hippocampus
62 BXD48a M R7297H 479 II Hippocampus
63 BXD50 F R7224H 530 I Hippocampus
64 BXD50 M R7221H 530 I Hippocampus
65 BXD51 F R7177H 487 I Hippocampus
66 BXD51 M R7290H 407 II Hippocampus
67 BXD55 M R7222H 528 I Hippocampus
68 BXD55 F R7225H 587 I Hippocampus
69 BXD56 M R7178H 501 I Hippocampus
70 BXD62 M R7291H 439 II Hippocampus
71 BXD63 M R7218H 438 I Hippocampus
72 BXD63 F R7215H 475 I Hippocampus
73 BXD64 M R7219H 528 I Hippocampus
74 BXD64 F R7216H 587 I Hippocampus
75 BXD65 F R7217H 425 I Hippocampus
76 BXD65a F R7273H 389 II Hippocampus
77 BXD65a M R7277H 715 II Hippocampus
78 BXD65b M R7271H 483 II Hippocampus
79 BXD66 M R7214H 463 I Hippocampus
80 BXD66 F R7302H 446 III Hippocampus
81 BXD67 F R7240H 499 I Hippocampus
82 BXD67 M R7213H 425 I Hippocampus
83 BXD67 F R7278H 415 II Hippocampus
84 BXD68 M R7212H 421 I Hippocampus
85 BXD68 F R7211H 415 I Hippocampus
86 BXD69 F R7305H 504 III Hippocampus
87 BXD70 F R7207H 458 I Hippocampus
88 BXD70 M R7204H 460 I Hippocampus
89 BXD71 M R7205H 471 I Hippocampus
90 BXD71 F R7208H 474 I Hippocampus
91 BXD73 F R7209H 470 I Hippocampus
92 BXD73 M R7206H 464 I Hippocampus
93 BXD73a F R7181H 443 I Hippocampus
94 BXD73a M R7182H 614 I Hippocampus
95 BXD76 M R7179H 579 I Hippocampus
96 BXD76 F R7188H 408 I Hippocampus
97 BXD76 M R7187H 564 I Hippocampus
98 BXD77 M R7292H 347 II Hippocampus
99 BXD77 F R7201H 454 I Hippocampus
100 BXD79 M R7202H 485 I Hippocampus
101 BXD79 F R7199H 515 I Hippocampus
102 BXD79 M R7298H 704 II Hippocampus
103 BXD81 M R7196H 515 I Hippocampus
104 BXD81 F R7190H 458 I Hippocampus
105 BXD83 M R7184H 441 I Hippocampus
106 BXD84 M R7195H 474 I Hippocampus
107 BXD84 M R7296H 484 II Hippocampus
108 BXD84 F R7192H 522 I Hippocampus
109 BXD85 M R7272H 425 II Hippocampus
110 BXD85 F R7193H 506 I Hippocampus
111 BXD86 M R7191H 425 I Hippocampus
112 BXD87 F R7194H 425 I Hippocampus
113 BXD87 M R7303H 478 III Hippocampus
114 BXD87 M R7186H 442 I Hippocampus
115 BXD89 F R7295H 446 II Hippocampus
116 BXD90 M R7287H 434 II Hippocampus
117 BXD90 M R7293H 558 II Hippocampus
118 BXD95 F R7180H 467 I Hippocampus
119 BXD95 M R7169H 467 I Hippocampus
120 BXD98 M R7237H 605 I Hippocampus
121 BXD98 F R7171H 639 I Hippocampus
122 BXD98 F R7275H 488 II Hippocampus
123 BXD99 M R7189H 524 I Hippocampus
124 BXD99 F R7172H 471 I Hippocampus
125 BXD100 F R7282H 463 II Hippocampus
126 BXD100 M R7283H 507 II Hippocampus
127 BXD100 M R7274H 577 II Hippocampus
128 BXD100 F R7226H 464 I Hippocampus
129 BXD101 F R7284H 490 II Hippocampus
130 BXD101 M R7285H 408 II Hippocampus
131 C57BL/6J M R7264H 489 I Hippocampus
132 C57BL/6J M R7289H 756 II Hippocampus
133 D2B6F1 M R7265H 492 I Hippocampus
134 D2B6F1 F R7304H 495 III Hippocampus
135 DBA/2J F R7185H 433 I Hippocampus
136 DBA/2J M R7269H 367 I Hippocampus
137 DBA/2J F R7301H 566 III Hippocampus


About the tissue used to generate this set of data:

Tissue Harvest 

The animals were sacrificed under saturated isoflurane. Hippocampus from the animals were dissected and stored at −80°C until RNA extraction. 



About the array platform:


About data values and data processing:

About data processing:

Raw microarray data were normalized using the Robust Multichip Array (RMA) method. The expression data were then re-normalized using a modified Z score.



Notes:


Experiment Type:

RNA Extraction

RNA was extracted using the RNeasy mini kit (Qiagen, Valencia, CA, USA) according to the manufactures’ procedure. 2100 BioAnalyzer (Agilent Technologies) was used to evaluate RNA integrity and quality. Samples with RNA Integrity Numbers (RIN values) > 8.0 were run on Affy MoGene1.0 ST at the UTHSC



Contributor:


Citation:


Data source acknowledgment:


Study Id:
156

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