Data Set Group2: HQF Striatum Affy Mouse Exon 1.0ST Gene Level (Dec09)

Data Set: HQF Striatum Affy Mouse Exon 1.0ST Exon Level (Dec09) RMA GN Accession: GN163 GEO Series: No Geo series yet Title: Organism: Mouse (Mus musculus, mm10) Group: BXD Tissue: Striatum mRNA Dataset Status: Public Platforms: Affy Mouse Exon 1.0ST (GPL6193) Normalization: RMA

Contact Information Glenn Rosen Beth Israel Deaconess Medical Center 330 Brookline Ave. Boston, MA 2215 USA Tel. 617 735-2870 grosen@bidmc.harvard.edu Website Download datasets and supplementary data files GN163_MeanDataAnnotated_rev081815.txt (N/A) GN163_StdError_rev081815.txt (N/A)

Specifics of this Data Set:

None

Summary:

About the cases used to generate this set of data:

A movie of the dissection of the brain, including the striatum, by Dr. Glenn Rosen. About the strains used to generate this set of data   Index Array ID Tube No. Tissue Strain Age Sex 1 R3025SA 1705 Striatum 129S1/SvImJ 60 F 2 R3026SA 1375 Striatum 129S1/SvImJ 59 M 3 R3027SA 1435 Striatum A/J 59 F 4 R3028SA 1455 Striatum A/J 59 M 5 R3029SA 1395 Striatum AKR/J 59 F 6 R3030SA 1415 Striatum AKR/J 59 M 7 R3031SA 1227 Striatum B6D2F1 59 F 8 R3032SA 1225 Striatum B6D2F1 59 M 9 R3033SA 1495 Striatum BALB/cByJ 59 F 10 R3034SA 1475 Striatum BALB/cByJ 59 M 11 R3035SA 1665 Striatum BTBRT<+>tf/J 59 F 12 R3036SA 1615 Striatum BTBRT<+>tf/J 60 M 13 R3037SA 457 Striatum BXD1 59 F 14 R3038SA 927 Striatum BXD1 59 M 15 R3055SA 487 Striatum BXD2 61 F 16 R3056SA 477 Striatum BXD2 61 M 17 R3089SA 977 Striatum BXD5 58 F 18 R3090SA 967 Striatum BXD5 58 M 19 R3091SA 557 Striatum BXD6 59 F 20 R3092SA 547 Striatum BXD6 59 M 21 R3093SA 717 Striatum BXD8 61 F 22 R3094SA 707 Striatum BXD8 61 M 23 R3095SA 647 Striatum BXD9 60 F 24 R3096SA 637 Striatum BXD9 60 M 25 R3039SA 517 Striatum BXD11 59 F 26 R3040SA 787 Striatum BXD11 59 M 27 R3041SA 817 Striatum BXD12 62 F 28 R3042SA 807 Striatum BXD12 59 M 29 R3043SA 877 Striatum BXD13 60 F 30 R3044SA 867 Striatum BXD13 60 M 31 R3045SA 1067 Striatum BXD14 59 F 32 R3144SA 1077 Striatum BXD14 59 M 33 R3047SA 1057 Striatum BXD15 60 F 34 R3048SA 1047 Striatum BXD15 60 M 35 R3049SA 767 Striatum BXD16 61 F 36 R3050SA 777 Striatum BXD16 61 M 37 R3051SA 1177 Striatum BXD18 59 F 38 R3052SA 1167 Striatum BXD18 59 M 39 R3053SA 957 Striatum BXD19 60 F 40 R3054SA 947 Striatum BXD19 60 M 41 R3057SA 1255 Striatum BXD20 60 F 42 R3058SA 1245 Striatum BXD20 60 M 43 R3059SA 1197 Striatum BXD21 48 F 44 R3060SA 1187 Striatum BXD21 48 M 45 R3061SA 1235 Striatum BXD22 58 F 46 R3062SA 1275 Striatum BXD22 60 M 47 R3063SA 1137 Striatum BXD23 60 F 48 R3064SA 1127 Striatum BXD23 60 M 49 R3065SA 437 Striatum BXD24 59 F 50 R3066SA 587 Striatum BXD24 60 M 51 R3067SA 1107 Striatum BXD27 60 F 52 R3068SA 1117 Striatum BXD27 60 M 53 R3069SA 1027 Striatum BXD28 60 F 54 R3070SA 1037 Striatum BXD28 60 M 55 R3071SA 1007 Striatum BXD29 58 F 56 R3072SA 1017 Striatum BXD29 58 M 57 R3073SA 997 Striatum BxD31 60 F 58 R3074SA 987 Striatum BxD31 60 M 59 R3075SA 917 Striatum BXD32 57 F 60 R3076SA 907 Striatum BXD32 57 M 61 R3077SA 897 Striatum BXD33 59 F 62 R3078SA 887 Striatum BXD33 59 M 63 R3079SA 837 Striatum BXD34 60 F 64 R3080SA 827 Striatum BXD34 60 M 65 R3081SA 857 Striatum BXD36 57 F 66 R3082SA 847 Striatum BXD36 57 M 67 R3083SA 697 Striatum BXD38 60 F 68 R3084SA 687 Striatum BXD38 60 M 69 R3085SA 677 Striatum BXD40 60 F 70 R3086SA 667 Striatum BXD40 60 M 71 R3087SA 577 Striatum BXD42 58 F 72 R3088SA 567 Striatum BXD42 58 M 73 R3097SA 1975 Striatum BXSB/MpJ 61 F 74 R3098SA 1945 Striatum BXSB/MpJ 61 M 75 R3099SA 1575 Striatum C3H/HeJ 60 F 76 R3100SA 1595 Striatum C3H/HeJ 60 M 77 R3101SA 1228 Striatum C57BL/6J 58 F 78 R3102SA 343 Striatum C57BL/6J 59 M 79 R3103SA (sample removed) 2305 Striatum CAST/Ei 61 F 80 R3104SA (sample removed) 2285 Striatum CAST/Ei 59 M 81 R3105SA 1223 Striatum DBA/2J 58 F 82 R3106SA 344 Striatum DBA/2J 59 M 83 R3107SA 1535 Striatum FVB/NJ 60 F 84 R3108SA 1555 Striatum FVB/NJ 60 M 85 R3109SA 1845 Striatum KK/HlJ 61 F 86 R3110SA 1835 Striatum KK/HlJ 61 M 87 R3111SA 1865 Striatum MOLF/EiJ 60 F 88 R3112SA 1855 Striatum MOLF/EiJ 60 M 89 R3113SA 1295 Striatum NOD/LtJ 58 F 90 R3114SA 1315 Striatum NOD/LtJ 58 M 91 R3115SA 2075 Striatum NZB/BlNJ 61 F 92 R3116SA 1515 Striatum NZB/BlNJ 58 M 93 R3117SA 1745 Striatum NZO/HlLtJ 61 F 94 R3118SA 1725 Striatum NZO/HlLtJ 61 M 95 R3119SA 1805 Striatum NZW/LacJ 65 F 96 R3120SA 1685 Striatum NZW/LacJ 70 M 97 R3121SA 1875 Striatum PWD/PhJ 70 F 98 R3122SA 1885 Striatum PWD/PhJ 70 M 99 R3123SA 1765 Striatum PWK/PhJ 59 F 100 R3124SA 1785 Striatum PWK/PhJ 60 M 101 R3125SA 1825 Striatum WSB/EiJ 71 F 102 R3126SA 1655 Striatum WSB/EiJ 71 M

About the tissue used to generate this set of data:

About the array platform:

About data values and data processing:

Notes:

Final and fully corrected Exon 1.0 ST array data. Entered by Arthur Centeno. Data error-checking by Manjunatha N. Jagalur . Tissue collected by Glenn Rosen. Array processing by Weikuan Gu.

Experiment Type:

Contributor:

Citation:

Data source acknowledgment:

Study Id:

35

• The UT Center for Integrative and Translational Genomics
• NIGMS Systems Genetics and Precision Medicine project (R01 GM123489, 2017-2021)
• NIDA NIDA Core Center of Excellence in Transcriptomics, Systems Genetics, and the Addictome (P30 DA044223, 2017-2022)
• NIA Translational Systems Genetics of Mitochondria, Metabolism, and Aging (R01AG043930, 2013-2018)
• NIAAA Integrative Neuroscience Initiative on Alcoholism (U01 AA016662, U01 AA013499, U24 AA013513, U01 AA014425, 2006-2017)
• NIDA, NIMH, and NIAAA (P20-DA 21131, 2001-2012)
• NCI MMHCC (U01CA105417), NCRR, BIRN, (U24 RR021760)