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Probe Information

The table below lists information of all probes of probe set 1427571_at from database Hippocampus Consortium M430v2 Probe (Jun06).

QTL Heat Map and ClusteringCorrelation Matrix and PCA

Probe1
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Sequence2
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bl2seq3Exons4Tm °C5
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Stacking Energy KBT6Mean7
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Stdev8
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Probe h29
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Probe Location10SNPs
(Across all strains)11		SNPs
(Different alleles only between C57BL/6J and DBA/2J)11
GSB
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NSB
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ChrStartEnd
1 239765TGGACCGCGACGAAGGCGCCAAGAA 91.757.970.00528.78920428.789228rs36962484
rs39024517
wt37-5-28789224
2 239766TGGACCGCGACGTAGGCGCCAAGAA7.970.00
3 458303CAAGAAGGTCTTCTACGTGATCGAG 79.487.980.00528.78918528.789209wt37-5-28789196
wt37-5-28789199
rs36962484
4 458304CAAGAAGGTCTTGTACGTGATCGAG7.970.00
5 490903TACGTGATCGAGACGCTGGAGCCGC 89.047.980.00528.78917228.789196rs37118948
wt37-5-28789182
rs36486465
wt37-5-28789196
6 490904TACGTGATCGAGTCGCTGGAGCCGC7.980.00
7 X58849TCGTGGCGCCGCACAACGACTCGGG 93.827.980.00528.78911128.789135wt37-5-28789113
8 X58850TCGTGGCGCCGCTCAACGACTCGGG7.980.00
9 501173ACGGCACCATTCTCATCAACCGGGT 88.08.020.00528.78892228.788946wt37-5-28788928
10 501174ACGGCACCATTCACATCAACCGGGT8.000.00
11 314869TCATCGAGGAGCACAGCTGGGCACA 89.447.990.00528.78887728.788901rs37009700
12 314870TCATCGAGGAGCTCAGCTGGGCACA7.980.00
13 466457GCAGCGCAATCTGCAACGGAAGCGA 89.287.960.00528.78876128.788785
14 466458GCAGCGCAATCTCCAACGGAAGCGA7.970.00
15 916681GGGCATCCACTGGTACTCGCAGCTG 88.38.010.00528.78871728.788741
16 916682GGGCATCCACTGCTACTCGCAGCTG8.020.00
17 555847TCGCAGCTGCTCTACCACATTGGCA 87.987.990.00528.78870128.788725
18 555848TCGCAGCTGCTCAACCACATTGGCA7.980.00
19 111313CACATTGGCACCTGGCTGTTGGACA 87.198.010.00528.78868628.78871
20 111314CACATTGGCACCAGGCTGTTGGACA7.990.00
21 340753GGCTGTTGGACAGCGAGACCATGCA 88.537.980.00528.78867328.788697
22 340754GGCTGTTGGACACCGAGACCATGCA7.990.00
CITG Web services initiated January, 1994 as Portable Dictionary of the Mouse Genome; June 15, 2001 as WebQTL; and Jan 5, 2005 as GeneNetwork. This site is currently operated by Rob Williams, Pjotr Prins, Zachary Sloan, Arthur Centeno. Design and code by Pjotr Prins, Zach Sloan, Arthur Centeno, Danny Arends, Christian Fischer, Sam Ockman, Lei Yan, Xiaodong Zhou, Christian Fernandez, Ning Liu, Rudi Alberts, Elissa Chesler, Sujoy Roy, Evan G. Williams, Alexander G. Williams, Kenneth Manly, Jintao Wang, and Robert W. Williams, colleagues. Python Powered Registered with Nif
GeneNetwork support from:
  • The UT Center for Integrative and Translational Genomics
  • NIGMS Systems Genetics and Precision Medicine project (R01 GM123489, 2017-2021)
  • NIDA NIDA Core Center of Excellence in Transcriptomics, Systems Genetics, and the Addictome (P30 DA044223, 2017-2022)
  • NIA Translational Systems Genetics of Mitochondria, Metabolism, and Aging (R01AG043930, 2013-2018)
  • NIAAA Integrative Neuroscience Initiative on Alcoholism (U01 AA016662, U01 AA013499, U24 AA013513, U01 AA014425, 2006-2017)
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  • NCI MMHCC (U01CA105417), NCRR, BIRN, (U24 RR021760)
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