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Trait Data and Analysis  for Record ID 1454998_at

  Details and Links

Gene Symbol: 1200011I18Rik
Aliases: KIAA1704; LSR7; AD029
Description: RIKEN cDNA 1200011I18 gene; distal 3' UTR (transQTL on Chr 4 in BXD eye data)
Location: Chr 14 @ 76.08636 Mb on the minus strand
Target Score: BLAT specificity: 12.2   Score: 243  
Species and Group: Mouse, BXD
Database 3: Hippocampus Consortium M430v2 (Jun06) PDNN
Resource Links: Gene  UniGene  GenBank  HomoloGene  
UCSC  BioGPS  STRING  PANTHER  Gemma  ABA  EBI GWAS  Wiki-Pi  

Add To Collection Find similar expression data  Check probe locations at UCSC  Write or review comments about this gene  View SNPs and Indels  Check sequence of probes
AddFindVerifyGeneWikiSNPsProbes

  Basic Statistics

Include:



StatisticValue
N of Samples99
Mean9.398
Median9.384
Standard Error (SE)0.016
Standard Deviation (SD)0.155
Minimum9.034
Maximum9.820
Range (log2)0.786
Range (fold)1.724
Interquartile Range1.122

nP_rviXBjvj.gif


This plot evaluates whether data are normally distributed. Different symbols represent different groups.

More about Normal Probability Plots and more about interpreting these plots from the glossary

Box_L0KLTrcx.gif

More about Box Plots

Bar_rrCHM37C.gif

Bar_h91TOSq5.gif

StatisticValue
N of Samples71
Mean9.396
Median9.387
Standard Error (SE)0.014
Standard Deviation (SD)0.119
Minimum9.140
Maximum9.720
Range (log2)0.580
Range (fold)1.495
Interquartile Range1.105

nP_O5itEeIX.gif


This plot evaluates whether data are normally distributed. Different symbols represent different groups.

More about Normal Probability Plots and more about interpreting these plots from the glossary

Box_4Qr0zH9b.gif

More about Box Plots

Bar_uDieq4yZ.gif

Bar_Zj0gE8XD.gif

StatisticValue
N of Samples32
Mean9.412
Median9.375
Standard Error (SE)0.038
Standard Deviation (SD)0.214
Minimum9.034
Maximum9.820
Range (log2)0.786
Range (fold)1.724
Interquartile Range1.221

nP_gcAxkCUv.gif


This plot evaluates whether data are normally distributed. Different symbols represent different groups.

More about Normal Probability Plots and more about interpreting these plots from the glossary

Box_fSm5v0qw.gif

More about Box Plots

Bar_xQ79DjRo.gif

Bar_zRaXMORM.gif

  Calculate Correlations

Database:
Return:
Samples:

Pearson    Spearman Rank



The Sample Correlation is computed between trait data and any
other traits in the sample database selected above. Use Spearman Rank
when the sample size is small (<20) or when there are influential outliers.
Database:
Return:
Samples:



The Literature Correlation (Lit r) between this gene and all other genes is computed
using the Semantic Gene Organizer and human, rat, and mouse data from PubMed.
Values are ranked by Lit r, but Sample r and Tissue r are also displayed.

More on using Lit r
Database:
Return:
Samples:

Pearson    Spearman Rank



The Tissue Correlation (Tissue r) estimates the similarity of expression of two genes
or transcripts across different cells, tissues, or organs (glossary). Tissue correlations
are generated by analyzing expression in multiple samples usually taken from single cases.
Pearson and Spearman Rank correlations have been computed for all pairs of genes
using data from mouse samples.

  Mapping Tools

Chromosome:
Mapping Scale:
Permutations:

Bootstrap Test (n=2000)
Use Parents
Use Weighted



Interval Mapping computes linkage maps for the entire genome or single
chromosomes. The Permutation Test estimates suggestive and significant
linkage scores. The Bootstrap Test estimates the precision of the QTL location.

Display LRS above:
Permutations:

Display all LRS
Use Parents
Use Weighted



Marker regression computes and displays LRS values for individual markers.
This function also lists additive effects (phenotype units per allele) and
dominance deviations for some datasets.

Chromosome:
Mapping Scale:
Control Locus:
Permutations:

Bootstrap Test (n=2000)
Use Parents



Composite Interval Mapping allows you to control for a single marker as
a cofactor. To find a control marker, run the Marker Regression function.

Sort by:
Return:

Permutation Test (n=500)



Pair-Scan searches for pairs of chromosomal regions that are
involved in two-locus epistatic interactions.

  Review and Edit Data

Edit or delete values in the Trait Data boxes, and use the Reset option as needed.

  Block samples by index:            
  Block samples by group:                
  Options:                       


  Outliers highlighted in  yellow  can be hidden using the Hide Outliers button,
  and samples with no value (x) can be hidden by clicking Hide No Value .


IndexSampleValue SENStatusRRIDEpochSeqCvge
1 B6D2F1 ± LiveJAX:1000060 
2 D2B6F1 ± Live 0 
3 C57BL/6J ± LiveJAX:000664069
4 DBA/2J ± LiveJAX:0006710108
5 BXD1 ± LiveJAX:000036136+39L
6 BXD2 ± LiveJAX:000075140
7 BXD5 ± UTHSCJAX:000037140
8 BXD6 ± CryoJAX:000007132
9 BXD8 ± CryoJAX:000084137
10 BXD9 ± CryoJAX:000105138
11 BXD11 ± UTHSCJAX:000012142
12 BXD12 ± LiveJAX:000045143
13 BXD13 ± LiveJAX:000040138
14 BXD14 ± CryoJAX:000329140
15 BXD15 ± LiveJAX:000095139
16 BXD16 ± ExtJAX:000013137
17 BXD18 ± CryoJAX:000015135
18 BXD19 ± CryoJAX:000010136
19 BXD20 ± LiveJAX:000330143
20 BXD21 ± LiveJAX:000077141
21 BXD22 ± CryoJAX:000043137
22 BXD23 ± ExtJAX:0000981 
23 BXD24 ± CryoJAX:000031140
24 BXD24a ± UTHSCJAX:032926136+30L
25 BXD25 ± CryoJAX:0000811 
26 BXD27 ± CryoJAX:000041139
27 BXD28 ± ExtJAX:000047135
28 BXD29 ± LiveJAX:010981140
29 BXD30 ± ExtJAX:0000731 
30 BXD31 ± UTHSCJAX:000083140
31 BXD32 ± LiveJAX:000078138
32 BXD33 ± LiveJAX:003222239
33 BXD34 ± LiveJAX:032926240+54L
34 BXD35 ± Ext 2 
35 BXD36 ± LiveJAX:003225242
36 BXD37 ±
37 BXD38 ± LiveJAX:003227241
38 BXD39 ± LiveJAX:003228230
39 BXD40 ± LiveJAX:003229240+35L
40 BXD41 ±
41 BXD42 ± LiveJAX:003230238
42 BXD43 ± LiveJAX:0070933a40
43 BXD44 ± LiveJAX:0070943a39
44 BXD45 ± LiveJAX:0070963a34
45 BXD48 ± LiveJAX:0070973a38
46 BXD48a (BXD96) ± LiveJAX:0071393a41
47 BXD49 ± CryoJAX:0070983a37
48 BXD50 ± LiveJAX:0070993a40
49 BXD51 ± CryoJAX:0071003a41
50 BXD52 ± Ext 3a 
51 BXD53 ± CryoJAX:0177493a34
52 BXD54 ±
53 BXD55 ± CryoJAX:0071033a40
54 BXD56 ± CryoJAX:0071043a40
55 BXD59 ± Ext 3b 
56 BXD60 ± LiveJAX:0071053b42
57 BXD61 ± LiveJAX:0071063b40
58 BXD62 ± LiveJAX:0071073b41
59 BXD63 ± LiveJAX:0071083b38
60 BXD64 ± LiveJAX:0071093b41
61 BXD65 ± LiveJAX:0071103b39
62 BXD65a (BXD97) ± LiveJAX:0071403b39
63 BXD65b (BXD92) ± CryoJAX:0096773b37
64 BXD66 ± LiveJAX:0071113b33
65 BXD67 ± LiveJAX:0071123b39
66 BXD68 ± LiveJAX:0071133b37
67 BXD69 ± LiveJAX:0071143b39
68 BXD70 ± LiveJAX:0071153b39
69 BXD71 ± CryoJAX:0071163b41
70 BXD72 ± Ext 3b 
71 BXD73 ± LiveJAX:0071173b33
72 BXD73a (BXD80) ± LiveJAX:0071243b36
73 BXD73b (BXD103) ± CryoJAX:0071463b37
74 BXD74 ± LiveJAX:0071183b34
75 BXD75 ± LiveJAX:0071193b39
76 BXD76 ± Ext 3b 
77 BXD77 ± CyroJAX:0071213b40
78 BXD78 ± LiveJAX:0240293b41+61L
79 BXD79 ± LiveJAX:0071233b37
80 BXD81 ± LiveJAX:0071253b34
81 BXD83 ± CryoJAX:0071263b38
82 BXD84 ± LiveJAX:0071273b42
83 BXD85 ± LiveJAX:0071283b41
84 BXD86 ± LiveJAX:0071293b42
85 BXD87 ± LiveJAX:0071303b40
86 BXD88 ± CryoJAX:0177503b40
87 BXD89 ± LiveJAX:0071323b42
88 BXD90 ± LiveJAX:0071333b38
89 BXD91 ± LiveJAX:0177513b34
90 BXD93 ± Ext 3b 
91 BXD94 ± Ext 3b 
92 BXD95 ± LiveJAX:0071383b32
93 BXD98 ± LiveJAX:0071413b38
94 BXD99 ± CryoJAX:0071423b39
95 BXD100 ± LiveJAX:0071433b40
96 BXD101 ± LiveJAX:0071443b29
97 BXD102 ± CryoJAX:0071453b43
98 BXD104 ± Ext 4 
99 BXD105 ± Ext 4 
100 BXD106 ± Ext 4 
101 BXD107 ± Ext 4 
102 BXD108 ± Ext 4 
103 BXD109 ± Ext 4 
104 BXD110 ± Ext 4 
105 BXD111 ± Ext 440
106 BXD112 ± Ext 4 
107 BXD113 ± LiveJAX:024030441
108 BXD114 ± Ext 437
109 BXD115 ± Ext 4 
110 BXD116 ± Ext 4 
111 BXD117 ± Ext 4 
112 BXD119 ± Ext 4 
113 BXD120 ± Ext 4 
114 BXD121 ± Ext 4 
115 BXD122 ± UTHSCJAX:030873444
116 BXD123 ± CyroJAX:025974440
117 BXD124 ± LiveJAX:025975441
118 BXD125 ± LiveJAX:024031436
119 BXD126 ± Ext 4 
120 BXD127 ± Ext 439
121 BXD128 ± LiveJAX:030874440
122 BXD128a ± CryoJAX:030875441
123 BXD130 ± Ext 4 
124 BXD131 ± LiveJAX:035596442
125 BXD132 ± Ext 4 
126 BXD133 ± Ext 4 
127 BXD134 ± Ext 4 
128 BXD135 ± Ext 4 
129 BXD136 ± Ext 4 
130 BXD137 ± Ext 437
131 BXD138 ± Ext 4 
132 BXD139 ± LiveJAX:0355974 
133 BXD141 ± Ext 437
134 BXD142 ± Ext 4 
135 BXD144 ± LiveJAX:025984439
136 BXD145 ± Ext 4 
137 BXD146 ± Ext 4 
138 BXD147 ± Ext 441+43L
139 BXD148 ± LiveJAX:035598439
140 BXD149 ± Ext 441
141 BXD150 ± UTHSCJAX:029867438
142 BXD151 ± LiveJAX:0298684 
143 BXD152 ± LiveJAX:029869439
144 BXD153 ± Ext 4 
145 BXD154 ± LiveJAX:025976441
146 BXD155 ± LiveJAX:029870438+55L
147 BXD156 ± LiveJAX:029871439
148 BXD157 ± LiveJAX:029872439
149 BXD160 ± UTHSCJAX:029873536
150 BXD161 ± LiveJAX:025985540+31L
151 BXD162 ± UTHSCJAX:035599541
152 BXD165 ± Ext 5 
153 BXD168 ± LiveJAX:029874545
154 BXD169 ± CryoJAX:029876531
155 BXD170 ± LiveJAX:029878532
156 BXD171 ± LiveJAX:029879538
157 BXD172 ± LiveJAX:029880539+37L
158 BXD173 ± Ext 536
159 BXD174 ± LiveJAX:035600538
160 BXD175 ± Ext 533
161 BXD176 ± ExtJAX:035601542
162 BXD177 ± LiveJAX:029881540
163 BXD178 ± LiveJAX:029882541
164 BXD180 ± LiveJAX:029883539
165 BXD181 ± Ext 534
166 BXD183 ± LiveJAX:035602542
167 BXD184 ± Ext 538
168 BXD186 ± Ext 537
169 BXD187 ± LiveJAX:031974634
170 BXD188 ± Ext 6 
171 BXD189 ± Ext 6 
172 BXD190 ± LiveJAX:030876640
173 BXD191 ± LiveJAX:030877638
174 BXD192 ± Ext 6 
175 BXD193 ± Ext 6 
176 BXD194 ± LiveJAX:030878636
177 BXD195 ± Ext 643
178 BXD196 ± Ext 642
179 BXD197 ± LiveJAX:030880629
180 BXD198 ± Ext 641
181 BXD199 ± LiveJAX:030881629
182 BXD200 ± Ext 6 
183 BXD201 ± Ext 635
184 BXD202 ± LiveJAX:031975629
185 BXD203 ± Ext 6 
186 BXD204 ± Ext 639
187 BXD205 ± Ext 640
188 BXD206 ± Ext 6 
189 BXD207 ± Ext 6 
190 BXD208 ± Ext 6 
191 BXD209 ± Ext 646
192 BXD210 ± Ext 642
193 BXD211 ± Ext 641
194 BXD212 ± Ext 6 
195 BXD213 ± LiveJAX:035603640
196 BXD214 ± LiveJAX:030882633
197 BXD215 ± UTHSCJAX:031977627
198 BXD216 ± LiveJAX:031978639
199 BXD217 ± Ext 634
200 BXD218 ± UTHSCJAX:035604636
201 BXD219 ± Ext 639
202 BXD220 ± Ext 6 
203 C57BL/6JxBXD037F1 ±
204 BXD001xBXD065aF1 ±
205 BXD009xBXD170F1 ±
206 BXD009xBXD172F1 ±
207 BXD012xBXD002F1 ±
208 BXD012xBXD021F1 ±
209 BXD020xBXD012F1 ±
210 BXD021xBXD002F1 ±
211 BXD024xBXD034F1 ±
212 BXD032xBXD005F1 ±
213 BXD032xBXD028F1 ±
214 BXD032xBXD65bF1 ±
215 BXD034xBXD024F1 ±
216 BXD034xBXD073F1 ±
217 BXD055xBXD074F1 ±
218 BXD055xBXD65bF1 ±
219 BXD061xBXD071F1 ±
220 BXD062xBXD077F1 ±
221 BXD065xBXD077F1 ±
222 BXD069xBXD090F1 ±
223 BXD071xBXD061F1 ±
224 BXD073bxBXD065F1 ±
225 BXD073bxBXD077F1 ±
226 BXD073xBXD034F1 ±
227 BXD073xBXD065F1 ±
228 BXD073xBXD077F1 ±
229 BXD074xBXD055F1 ±
230 BXD077xBXD062F1 ±
231 BXD083xBXD045F1 ±
232 BXD087xBXD100F1 ±
233 BXD065bxBXD055F1 ±
234 BXD102xBXD077F1 ±
235 BXD102xBXD73bF1 ±
236 BXD170xBXD172F1 ±
237 BXD172xBXD197F1 ±
238 BXD197xBXD009F1 ±
 
IndexSampleValue SENStatusRRIDEpochSeqCvge
1 B6D2F1 ± LiveJAX:1000060 
2 D2B6F1 ± Live 0 
3 C57BL/6J ± LiveJAX:000664069
4 DBA/2J ± LiveJAX:0006710108
5 129S1/SvImJ ±
6 A/J ±
7 AKR/J ±
8 BALB/cByJ ±
9 BALB/cJ ±
10 C3H/HeJ ±
12 CAST/EiJ ±
13 CXB1 ±
15 CXB11 ±
16 CXB12 ±
17 CXB13 ±
18 CXB2 ±
22 CXB6 ±
24 CXB8 ±
25 CXB9 ±
26 KK/HlJ ±
27 LG/J ±
28 NOD/ShiLtJ ±
30 PWD/PhJ ±
32 WSB/EiJ ±

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